Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14]
3,129 sequences; 382,055,938 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq3 91.5 3e-13
>seq3
Length=16781886
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | || || | || ||||| | || | ||| || ||| || || ||
Sbjct 16131941 ATTCCACCGCGGAGGCGAAGAACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCT 16131882
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
||||| || || |||| |||||||| || |||||||| || | | ||| ||||| ||
Sbjct 16131881 GATAAGGTCCGGCCATCCTCCAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGA 16131822
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
| ||||||||||| ||||| |||||| || | || || | || || ||
Sbjct 16131821 AGGATTCCTTCTTTGTCTTGAATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCA 16131762
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || ||||| ||||| || ||||| | || || | ||| ||||||||
Sbjct 16131761 ACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 16131712
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | || || | || ||||| | || | ||| || ||| || || ||
Sbjct 16199745 ATTCCACCGCGGAGGCGAAGAACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCT 16199686
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
||||| || || |||| |||||||| || |||||||| || | | ||| ||||| ||
Sbjct 16199685 GATAAGGTCCGGCCATCCTCCAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGA 16199626
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
| ||||||||||| ||||| |||||| || | || || | || || ||
Sbjct 16199625 AGGATTCCTTCTTTGTCTTGAATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCA 16199566
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || ||||| ||||| || ||||| | || || | ||| ||||||||
Sbjct 16199565 ACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 16199516
Score = 87.8 bits (96), Expect = 4e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| || | || | ||| | ||||| ||| || | |||||| || ||
Sbjct 16132167 ACCACCACGAAGGCGCAGGACAAGATGAAGAGTAGACTCCTTCTGAACATTATAGTCCGA 16132108
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG--ATCAGGT 192426
|| || ||| |||| | || ||||| ||||||||||| | ||||| || | |||
Sbjct 16132107 CAAGGTGCGTCCATCCTGCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGAAACCAG-- 16132050
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || ||||| || || || | ||| ||||| || | || || ||
Sbjct 16132049 GGGATACCCTCCTTATCCTGAATCTTGTATTTGACATTTTCTACGGTGTCCGAGCTCTCC 16131990
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || ||||| ||| | || ||||||| || || | ||| |||||||||
Sbjct 16131989 ACCTCGAGAGTGATGCTCTTCCCAGTTACAGTCTTCACAAAAATCTGCATT 16131939
Score = 87.8 bits (96), Expect = 4e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| || | || | ||| | ||||| ||| || | |||||| || ||
Sbjct 16199971 ACCACCACGAAGGCGCAGGACAAGATGAAGAGTAGACTCCTTCTGAACATTATAGTCCGA 16199912
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG--ATCAGGT 192426
|| || ||| |||| | || ||||| ||||||||||| | ||||| || | |||
Sbjct 16199911 CAAGGTGCGTCCATCCTGCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGAAACCAG-- 16199854
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || ||||| || || || | ||| ||||| || | || || ||
Sbjct 16199853 GGGATACCCTCCTTATCCTGAATCTTGTATTTGACATTTTCTACGGTGTCCGAGCTCTCC 16199794
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || ||||| ||| | || ||||||| || || | ||| |||||||||
Sbjct 16199793 ACCTCGAGAGTGATGCTCTTCCCAGTTACAGTCTTCACAAAAATCTGCATT 16199743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984440531889150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |