Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 3e-13 >seq3 Length=16781886 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || ||||| | || | ||| || ||| || || || Sbjct 16131941 ATTCCACCGCGGAGGCGAAGAACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCT 16131882 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| |||||||| || |||||||| || | | ||| ||||| || Sbjct 16131881 GATAAGGTCCGGCCATCCTCCAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGA 16131822 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 | ||||||||||| ||||| |||||| || | || || | || || || Sbjct 16131821 AGGATTCCTTCTTTGTCTTGAATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCA 16131762 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 16131761 ACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 16131712 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || ||||| | || | ||| || ||| || || || Sbjct 16199745 ATTCCACCGCGGAGGCGAAGAACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCT 16199686 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| |||||||| || |||||||| || | | ||| ||||| || Sbjct 16199685 GATAAGGTCCGGCCATCCTCCAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGA 16199626 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 | ||||||||||| ||||| |||||| || | || || | || || || Sbjct 16199625 AGGATTCCTTCTTTGTCTTGAATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCA 16199566 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 16199565 ACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 16199516 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | ||| | ||||| ||| || | |||||| || || Sbjct 16132167 ACCACCACGAAGGCGCAGGACAAGATGAAGAGTAGACTCCTTCTGAACATTATAGTCCGA 16132108 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG--ATCAGGT 192426 || || ||| |||| | || ||||| ||||||||||| | ||||| || | ||| Sbjct 16132107 CAAGGTGCGTCCATCCTGCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGAAACCAG-- 16132050 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || | ||| ||||| || | || || || Sbjct 16132049 GGGATACCCTCCTTATCCTGAATCTTGTATTTGACATTTTCTACGGTGTCCGAGCTCTCC 16131990 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| ||| | || ||||||| || || | ||| ||||||||| Sbjct 16131989 ACCTCGAGAGTGATGCTCTTCCCAGTTACAGTCTTCACAAAAATCTGCATT 16131939 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | ||| | ||||| ||| || | |||||| || || Sbjct 16199971 ACCACCACGAAGGCGCAGGACAAGATGAAGAGTAGACTCCTTCTGAACATTATAGTCCGA 16199912 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG--ATCAGGT 192426 || || ||| |||| | || ||||| ||||||||||| | ||||| || | ||| Sbjct 16199911 CAAGGTGCGTCCATCCTGCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGAAACCAG-- 16199854 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || | ||| ||||| || | || || || Sbjct 16199853 GGGATACCCTCCTTATCCTGAATCTTGTATTTGACATTTTCTACGGTGTCCGAGCTCTCC 16199794 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| ||| | || ||||||| || || | ||| ||||||||| Sbjct 16199793 ACCTCGAGAGTGATGCTCTTCCCAGTTACAGTCTTCACAAAAATCTGCATT 16199743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984440531889150