Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq22 118 3e-21 seq5 116 1e-20 seq13 91.5 4e-13 seq3 91.5 4e-13 seq2 91.5 4e-13 >seq22 Length=10398566 Score = 118 bits (130), Expect = 3e-21 Identities = 232/341 (68%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | ||| ||||| |||||| ||| | | ||| || Sbjct 7937206 ATTTCTCACCGTACCATCATACTTGACCATTATGTCCTCCATAGCCTTCACAAGACGCCG 7937147 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||||| || ||| ||| ||||| ||||| ||||| || ||||| | | |||||| Sbjct 7937146 TTGAATATACCCTGTTTCAGACGTTTTAACAGCAGTATCGATCAGACCTTCCCTACCACC 7937087 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | ||| | ||| | || | || ||||| |||| || || Sbjct 7937086 CATAGCATGAAAGAAGAACTCCTGAGGTGTCAAACCACGAAGGTAGGAGTTCTCCACAAA 7937027 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT- 302776 |||||| || || || ||| ||| || ||||| |||| || | | | || Sbjct 7937026 ACCACGACTTTCAGGGCCATAGTCATCCTTCGTGAAGTGAGGCAATGT--TCTACCAATG 7936969 Query 302777 -AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || | ||||| || || || || || || || || || | || | | |||| || Sbjct 7936968 AACCCAAAAGGGATTCGTTTGCCCTCCACATTTTGTTGCCCGACACAAGCAGTCATTTGT 7936909 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||| || | | ||| ||||| ||||| || | ||||| Sbjct 7936908 GAAATGTTAATAAAACTACCCTTTGAGCCTGCTGTGACCAT 7936868 Score = 96.9 bits (106), Expect = 1e-14 Identities = 119/157 (76%), Gaps = 12/157 (8%) Strand=Plus/Minus Query 301814 GAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCA---ACACCAG 301870 || || | |||| |||||| |||||| | || || || ||| |||| ||||||| Sbjct 7937947 GATTTCCCTCAA-ACGGGGTACACCAAGAGTAACATT---CTT---CGCACTGACACCAG 7937895 Query 301871 CAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAA 301930 || |||||||||||||||| || | ||||| | ||| ||||||||| ||| || || | Sbjct 7937894 CATAGTGGAAAGTATTCAGGGTCATCTGAGTTGCTGGTTCACCAATAGATTGGGCGGCCA 7937835 Query 301931 TCATA-CCAACCATTTCTCCTGGTGCTACAATAGACT 301966 || | |||| |||||| ||||| ||||||| ||||| Sbjct 7937834 -CACAGCCAATCATTTCGCCTGGAGCTACAAGAGACT 7937799 >seq5 Length=15024279 Score = 116 bits (128), Expect = 1e-20 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||||||| ||||| ||||| |||||||| | ||| || || | | Sbjct 11649891 TACCCTTCCTCTTGCCACCCCCTTGATCAACATAACGAGCAGTATCATTAAACACTCGCA 11649832 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||||||||| ||| ||||| ||||| ||||| || || ||||| | |||| || | Sbjct 11649831 GCATAGGAACAATCCCATTAGAAGTCCCATTTGTCCCACGAATGTAACTCCCAGTTGCAC 11649772 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| || |||||| | ||||| || |||| |||| || ||| || |||| Sbjct 11649771 GAATGTTGTGAATAGAAACACCAATTCCTCCTGCGGATTTGCTTATGACAGCACACTCCT 11649712 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | ||||| |||| || |||||| ||| |||| ||| Sbjct 11649711 TCAGAGTATCATAAATTCCCTCAATACTATCCTCTTTCAT 11649672 >seq13 Length=11759267 Score = 91.5 bits (100), Expect = 4e-13 Identities = 325/498 (65%), Gaps = 15/498 (3%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||||| ||| | ||| || ||| || || ||||| | ||| ||||| | || Sbjct 616065 ATCAAACCGACCCGGCCGAAGCAAAGCTTTATCCAAGATATCAGGTCTATTTGTACCAGC 616006 Query 288912 CAATACAACAAT---AG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGAT 288967 | |||||||| || | ||| || | |||||||||||| | || | || | Sbjct 616005 AAGTACAACAACGCCAGCAGTCG--TTCC--AAATCCATCCATTTCTACTAGCAACTGGT 615950 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCttttt 289026 | || || ||| ||||||||||||| ||| || | || ||| ||| || | Sbjct 615949 TCAGAGTGCTTTCTCTTTCATCATTTGCACCAGAGAAACCTCCACGAC---CTC-TTGCT 615894 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||| |||||||||||||| || ||||| | | || | | |||||| || | Sbjct 615893 CGACCAATGGCATCAATTTCGTCGATAAAAATAATGCTGGGTGCACATTGTCTAGCTTCT 615834 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| | ||| || | ||| | || | ||||||| ||||||| | || || ||| Sbjct 615833 TGGAATAAGTTTCTAACCCTGGAAGGGCCCACACCAACAAACATTTCCATGAAGTCTGAA 615774 Query 289147 GCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || | | || | ||| | || | ||| ||||| ||| | |||||||| || Sbjct 615773 CCAGA-AATAGACAGGAAGGGCACGCCGGATTCTCCTGCCGTTGCTTTTGCCAGAAGGGT 615715 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 ||| || || || || || || | | ||| | || || || | ||| || || | Sbjct 615714 CTTTCCAGTGCCGGGAGGACCAACAAGGAGAGCACCTTTGGGAATTTTGGCTCCTAAATC 615655 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||||||| |||| | || | || | |||| ||| | ||| | ||| || || Sbjct 615654 CTCGTATTTCTTAGGGTTTTTAAGGAAGTGCACAAACTCCATGATTTCTTGTTTGGCTTC 615595 Query 289326 ATCACATCCTGCTACATC 289343 |||||| || || ||||| Sbjct 615594 ATCACAGCCAGCAACATC 615577 >seq3 Length=16781886 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||||||||| |||| ||| || || || || | ||| ||||||| ||||||||||||| Sbjct 11732669 TTGCAAATAGATCTCGTACTCGAGAAGCACCCATACCCACATACAATTCTACAAATTCAC 11732610 Query 289145 AAGCGGA--TACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| || ||| |||||| | || | ||||| || ||||| || | || ||||| Sbjct 11732609 TAGCTGAACAACT--AATGAAGGGAACTTCAGCTTCCCCAGCTACAGCTTTTGCAAGAAG 11732552 Query 289203 TGTCTTACCTGTTCCAGG 289220 ||| |||||||| ||||| Sbjct 11732551 TGTTTTACCTGTCCCAGG 11732534 >seq2 Length=17334668 Score = 91.5 bits (100), Expect = 4e-13 Identities = 325/498 (65%), Gaps = 15/498 (3%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||||| ||| | ||| || ||| || || ||||| | ||| ||||| | || Sbjct 4676119 ATCAAACCGACCCGGCCGAAGCAAAGCTTTATCCAAGATATCAGGTCTATTTGTACCAGC 4676060 Query 288912 CAATACAACAAT---AG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGAT 288967 | |||||||| || | ||| || | |||||||||||| | || | || | Sbjct 4676059 AAGTACAACAACGCCAGCAGTCG--TTCC--AAATCCATCCATTTCTACTAGCAACTGGT 4676004 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCttttt 289026 | || || ||| ||||||||||||| ||| || | || ||| ||| || | Sbjct 4676003 TCAGAGTGCTTTCTCTTTCATCATTTGCACCAGAGAAACCTCCACGAC---CTC-TTGCT 4675948 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||| |||||||||||||| || ||||| | | || | | |||||| || | Sbjct 4675947 CGACCAATGGCATCAATTTCGTCGATAAAAATAATGCTGGGTGCACATTGTCTAGCTTCT 4675888 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| | ||| || | ||| | || | ||||||| ||||||| | || || ||| Sbjct 4675887 TGGAATAAGTTTCTAACCCTGGAAGGGCCCACACCAACAAACATTTCCATGAAGTCTGAA 4675828 Query 289147 GCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || | | || | ||| | || | ||| ||||| ||| | |||||||| || Sbjct 4675827 CCAGA-AATAGACAGGAAGGGCACGCCGGATTCTCCTGCCGTTGCTTTTGCCAGAAGGGT 4675769 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 ||| || || || || || || | | ||| | || || || | ||| || || | Sbjct 4675768 CTTTCCAGTGCCGGGAGGACCAACAAGGAGAGCACCTTTGGGAATTTTGGCTCCTAAATC 4675709 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||||||| |||| | || | || | |||| ||| | ||| | ||| || || Sbjct 4675708 CTCGTATTTCTTAGGGTTTTTAAGGAAGTGCACAAACTCCATGATTTCTTGTTTGGCTTC 4675649 Query 289326 ATCACATCCTGCTACATC 289343 |||||| || || ||||| Sbjct 4675648 ATCACAGCCAGCAACATC 4675631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471758594372473