Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 5e-12 seq12 84.2 2e-11 >seq3 Length=16781886 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| |||||||| || ||| |||| || || | ||| || |||| |||| ||| Sbjct 16131939 AATGCAGATTTTTGTGAAGACTGTAACTGGGAAGAGCATCACTCTCGAGGTGGAGAGCTC 16131998 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | || || || | | || ||| | |||||| ||||| || || | ||| | || Sbjct 16131999 G-GACACCGTAGAAAATGTCAAATACAAGATTCAGGATAAGGAGGGTATCCCCTGGTTTC 16132057 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || ||||||||| |||| | || || ||||||| | Sbjct 16132058 AGCAGAGGCTCATCTTTGCTGGGAAACAGCTGCAGGATGGACGCACCTTGTCGGACTATA 16132117 Query 107734 ACATTCAAAAGGAGTCTAC 107752 | |||| ||||||||||| Sbjct 16132118 ATGTTCAGAAGGAGTCTAC 16132136 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| |||||||| || ||| |||| || || | ||| || |||| |||| ||| Sbjct 16199743 AATGCAGATTTTTGTGAAGACTGTAACTGGGAAGAGCATCACTCTCGAGGTGGAGAGCTC 16199802 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | || || || | | || ||| | |||||| ||||| || || | ||| | || Sbjct 16199803 G-GACACCGTAGAAAATGTCAAATACAAGATTCAGGATAAGGAGGGTATCCCCTGGTTTC 16199861 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || ||||||||| |||| | || || ||||||| | Sbjct 16199862 AGCAGAGGCTCATCTTTGCTGGGAAACAGCTGCAGGATGGACGCACCTTGTCGGACTATA 16199921 Query 107734 ACATTCAAAAGGAGTCTAC 107752 | |||| ||||||||||| Sbjct 16199922 ATGTTCAGAAGGAGTCTAC 16199940 >seq12 Length=12612916 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || || | || ||||| ||||| ||| |||| |||| ||| Sbjct 12401243 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGAGCTC- 12401301 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || ||| ||||| || || || ||| | || ||| || Sbjct 12401302 CGACACGATCGACAACGTCAAAGCTAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 12401361 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||| ||| ||||||||| | || ||||||||||||| Sbjct 12401362 GCAGCGGCTCATCTTCGCCGGTAAGCAGTTGGAGGACGGCCGCACTCTGGCGGACTACAA 12401421 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || ||||| || || | ||| |||| Sbjct 12401422 CATCCAGAAGGAATCAACCCTCCACCTGGT 12401451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398861588957881