Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq8 131 1e-25 seq3 109 4e-19 seq7 105 5e-18 seq10 91.5 1e-13 >seq8 Length=13970067 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| || | |||||| | || || |||||||| || ||||||||||| || ||| Sbjct 10823952 CCACCCCTTAACCTCAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTATAGTCTGCA 10824011 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || ||||||||| | ||||| | ||||| || || || Sbjct 10824012 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCGGGAGGG 10824071 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | ||||| || || || Sbjct 10824072 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACC 10824131 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || | |||||| ||||| |||||||| Sbjct 10824132 TCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 10824178 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||||||| || || | || || ||||| || |||||||||||||| || ||| Sbjct 10823496 CCGCCCCTCAAACGAAGAACAAGGTGGAGGGTGGACTCCTTTTGAATGTTATAGTCGGCA 10823555 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| || | || | | ||||| ||||| || Sbjct 10823556 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCCGGAGGG 10823615 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| ||||| || ||| || | ||| || | || | ||||| || ||| || Sbjct 10823616 ATGCCCTCCTTGTCCTG-AATCTTCGCTTTCACGTTATCAATGGTGTCCGAGCTTTCAAC 10823674 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | ||| || ||||| |||||||| Sbjct 10823675 CTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 10823722 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| | || ||| | || || ||||| ||||| || ||||| ||||||||| Sbjct 10823724 CCCCCCCTCAGCCTCAACACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAATCCGCA 10823783 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| ||||| || || || || | |||| | ||||||||||| ||| Sbjct 10823784 AGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCCGGGGGA 10823843 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || || || ||| || | |||||| | || | ||||| || || || Sbjct 10823844 ATGCCCTCCTTATCCTG-AATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTCTCCAC 10823902 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || ||||| || || || | ||| || || || |||||||| Sbjct 10823903 CTCAAGGGTAATAGTCTTACCCGTGAGGGTCTTCACGAAAATCTGCAT 10823950 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| |||||||| || || ||||| |||||||| | |||||| ||| || || || Sbjct 10823292 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCAAGCTGC 10823351 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || ||||| | ||||| | ||||| ||||||||||| ||||| ||||| || ||| || Sbjct 10823352 TTCCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCCTCCTTGTCCTG-AATCTT 10823410 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| | || | ||| || || || || || | || || || ||||| || Sbjct 10823411 AGCCTTCACATTATCAATAGTATCGGAGCTCTCAACCTCCAAGGTGATCGTCTTGCCGGT 10823470 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | ||| || ||||| || ||||| Sbjct 10823471 GAGGGTCTTGACAAAGATTTGCAT 10823494 >seq3 Length=16781886 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||||||||| ||||| || ||||| ||||| || || | | ||| || | Sbjct 16131926 CGAAGAACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCTGATAAGGTCCGGCCA 16131867 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| || |||||| |||| | | |||||||| || | || || |||||| Sbjct 16131866 TCCTCCAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGAAGGATTCCTTCTTTG 16131807 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| || | |||| | |||||||| || || || ||||| || Sbjct 16131806 TCTTGAATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCAACCTCGAGAGTGATG 16131747 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || ||||| |||||||| Sbjct 16131746 GTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 16131712 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||||||||| ||||| || ||||| ||||| || || | | ||| || | Sbjct 16199730 CGAAGAACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTACTCTGATAAGGTCCGGCCA 16199671 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| || |||||| |||| | | |||||||| || | || || |||||| Sbjct 16199670 TCCTCCAATTGCTTCCCAGCAAATATGAGCCGCTGCTGATCGGGAAGGATTCCTTCTTTG 16199611 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| || | |||| | |||||||| || || || ||||| || Sbjct 16199610 TCTTGAATTTTACCCTTCAGGTTTTCAATTGTGTCAGAGCTCTCAACCTCGAGAGTGATG 16199551 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || ||||| |||||||| Sbjct 16199550 GTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 16199516 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| || || | ||||| || |||||||| |||| || || |||| Sbjct 16131482 CCACCTCTCAGACGTAGGACGAGGTGAAGGGTTGATTCTTTCTGAACATTGTAGTCCGAC 16131423 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || |||||||||||||| ||| | || | ||||||||||||| || Sbjct 16131422 AGAGTGTGACCGTCCTCGAGTTGTTTGCCTGCAAAGATGAGCCTTTGCTGATCCGAGGGG 16131363 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| |||| | ||||| || || || Sbjct 16131362 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATCGTGTCGGAGCTCTCAACC 16131303 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || || || | || || ||||| || ||||| Sbjct 16131302 TCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 16131256 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| || || | ||||| || |||||||| |||| || || || | Sbjct 16199286 CCACCTCTCAGACGTAGGACGAGGTGAAGGGTTGATTCTTTCTGAACATTGTAGTCTGAC 16199227 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || |||||||||||||| ||| | || | ||||||||||||| || Sbjct 16199226 AGAGTGTGACCGTCCTCGAGTTGTTTGCCTGCAAAGATGAGCCTTTGCTGATCCGAGGGG 16199167 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| |||| | ||||| || || || Sbjct 16199166 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATCGTGTCGGAGCTCTCAACC 16199107 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || || || | || || ||||| || ||||| Sbjct 16199106 TCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 16199060 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || || || ||||| ||||| || || | | ||||| || ||||||||| Sbjct 16131230 TGGAGGGTTGACTCCTTTTGGATGTTGTACTCTGAGAGTGTGCGGCCGTCCTCGAGTTGT 16131171 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | || | || ||||| ||||| ||||| ||||| ||||| || | || Sbjct 16131170 TTACCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTC 16131111 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| |||| | ||||| || || || || | ||| || || ||||| || Sbjct 16131110 GACTTCACATTTTCAATTGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTG 16131051 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || || || || |||||||| Sbjct 16131050 AGAGTCTTCACGAAGATCTGCAT 16131028 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || || || ||||| ||||| || || | | ||||| || ||||||||| Sbjct 16199034 TGGAGGGTTGACTCCTTTTGGATGTTGTACTCTGAGAGTGTGCGGCCGTCCTCGAGTTGT 16198975 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | || | || ||||| ||||| ||||| ||||| ||||| || | || Sbjct 16198974 TTACCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTC 16198915 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| |||| | ||||| || || || || | ||| || || ||||| || Sbjct 16198914 GACTTCACATTTTCAATTGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTGCCGGTG 16198855 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || || || || |||||||| Sbjct 16198854 AGAGTCTTCACGAAGATCTGCAT 16198832 >seq7 Length=14728688 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| |||||||| ||||| ||||| || || || | |||||| Sbjct 13849642 ACGGAGGACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCC 13849583 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || || || || | || | | ||||||||||| ||||| ||||| || Sbjct 13849582 GTCCTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATCCCCTCCTT 13849523 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || ||| | || | ||||| || || || ||||| || || Sbjct 13849522 GTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGAT 13849463 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||| |||||| || || |||||||| Sbjct 13849462 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 13849427 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| | ||||| | || || |||||||| ||||| ||||| || || || Sbjct 13849881 CCACCCCTCAGCCTGAGCACGAGGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCG 13849822 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || ||||| || || || ||| | || | |||||||| ||||| || Sbjct 13849821 AGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCAAAGATGAGCCTTTGCTGGTCCGGGGGG 13849762 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | || || || | || | ||||| || || || Sbjct 13849761 ATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCGACC 13849702 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || |||| |||||| || || |||||||| Sbjct 13849701 TCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 13849655 >seq10 Length=13112115 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| || || | ||||||||||| || || || | || ||||| | | Sbjct 3659509 CCGCCCCTGAGACGGAGGACAAGGTGAAGCGTGGACTCCTTCTGTACATTGTAATCGGAA 3659568 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGA-TCCGGCGG 29678 | ||||| || |||||||||||| || | | | ||||||||| | ||| || Sbjct 3659569 AGTGTGCGCTCGTCCCTGAGTTGTTTGCCTGCGAAGACAAGCCTTTGCTGATTGCGGAGG 3659628 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT-- 29736 || ||||| ||||| || | || || ||| | | | ||||||| |||||| Sbjct 3659629 -ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTGGCAATGGTGTCAG--AGTTCTCG 3659685 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| || || |||||||| | || || |||||||||||||| Sbjct 3659686 ACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTCACAAATATCTGCAT 3659735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385204509786189