Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3 183 6e-41 seq10 109 1e-18 seq8 107 4e-18 seq7 89.7 1e-12 >seq3 Length=16781886 Score = 183 bits (202), Expect = 6e-41 Identities = 179/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||||||| ||||| | || ||||| ||||||||||| | ||| ||||| || Sbjct 16131710 CCCCCTCTCAAACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATTGTAATCGGAC 16131651 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| ||||| || ||||| || ||||||||||| || || || || |||| || Sbjct 16131650 AGAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAGGGG 16131591 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || |||||||| || ||||| ||||| || || || ||||| |||||| |||| || || Sbjct 16131590 ATGCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCAATTGTATCA-GAGGTCTCAAC 16131532 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| |||||| ||||| || || | ||||| ||||| |||||||| Sbjct 16131531 CTCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATCTGCAT 16131484 Score = 183 bits (202), Expect = 6e-41 Identities = 179/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||||||| ||||| | || ||||| ||||||||||| | ||| ||||| || Sbjct 16199514 CCCCCTCTCAAACGGAGAACAAGATGGAGAGTTGATTCTTTCTGAACATTGTAATCGGAC 16199455 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| ||||| || ||||| || ||||||||||| || || || || |||| || Sbjct 16199454 AGAGTTCTCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGAGGGG 16199395 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || |||||||| || ||||| ||||| || || || ||||| |||||| |||| || || Sbjct 16199394 ATGCCTTCCTTGTCCTGAATTTTTGCCTTGACGTTCTCAATTGTATCA-GAGGTCTCAAC 16199336 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| |||||| ||||| || || | ||||| ||||| |||||||| Sbjct 16199335 CTCCAGAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATCTGCAT 16199288 Score = 143 bits (158), Expect = 5e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||| || || | ||| || || ||||||||||| | ||| || || || Sbjct 16131482 CCACCTCTCAGACGTAGGACGAGGTGAAGGGTTGATTCTTTCTGAACATTGTAGTCCGAC 16131423 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | |||||| || |||||||| || |||||||| || ||||| ||||| | || Sbjct 16131422 AGAGTGTGACCGTCCTCGAGTTGTTTGCCTGCAAAGATGAGCCTTTGCTGATCCGAGGGG 16131363 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || || ||||| || || || ||||| ||||| || || | || || Sbjct 16131362 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATCGTGTCGG-AGCTCTCAAC 16131304 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || | ||||||||||| || ||||| Sbjct 16131303 CTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 16131256 Score = 143 bits (158), Expect = 5e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||| || || | ||| || || ||||||||||| | ||| || || || Sbjct 16199286 CCACCTCTCAGACGTAGGACGAGGTGAAGGGTTGATTCTTTCTGAACATTGTAGTCTGAC 16199227 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | |||||| || |||||||| || |||||||| || ||||| ||||| | || Sbjct 16199226 AGAGTGTGACCGTCCTCGAGTTGTTTGCCTGCAAAGATGAGCCTTTGCTGATCCGAGGGG 16199167 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || || ||||| || || || ||||| ||||| || || | || || Sbjct 16199166 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATCGTGTCGG-AGCTCTCAAC 16199108 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || | ||||||||||| || ||||| Sbjct 16199107 CTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTTACAAAGATTTGCAT 16199060 Score = 129 bits (142), Expect = 1e-24 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | || || || | ||| || || || || || || || || || || | Sbjct 16131256 TACCGCCTCTGAGGCGAAGGACGAGGTGGAGGGTTGACTCCTTTTGGATGTTGTACTCTG 16131197 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || |||||||| ||||||||||| || || || || || |||| Sbjct 16131196 AGAGTGTGCGGCCGTCCTCGAGTTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCCGGAG 16131137 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || ||||| || || ||||| | || ||||||||||| || || || | || Sbjct 16131136 GAATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTTTCAATTGTGTC-GGAGCTCTCA 16131078 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| || |||||||| || | ||||| || || |||||||| Sbjct 16131077 ACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 16131028 Score = 129 bits (142), Expect = 1e-24 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | || || || | ||| || || || || || || || || || || | Sbjct 16199060 TACCGCCTCTGAGGCGAAGGACGAGGTGGAGGGTTGACTCCTTTTGGATGTTGTACTCTG 16199001 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||||| || |||||||| ||||||||||| || || || || || |||| Sbjct 16199000 AGAGTGTGCGGCCGTCCTCGAGTTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCCGGAG 16198941 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || ||||| || || ||||| | || ||||||||||| || || || | || Sbjct 16198940 GAATGCCCTCCTTGTCCTGGATCTTCGACTTCACATTTTCAATTGTGTC-GGAGCTCTCA 16198882 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| || |||||||| || | ||||| || || |||||||| Sbjct 16198881 ACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 16198832 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | || |||||||| || ||||| | |||||| || || | | | || Sbjct 16132154 CGCAGGACAAGATGAAGAGTAGACTCCTTCTGAACATTATAGTCCGACAAGGTGCGTCCA 16132095 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || | || ||||| ||||||||||| || || || ||| || || || |||||| Sbjct 16132094 TCCTGCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGAAACCAGGGGATACCCTCCTTA 16132035 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || |||||||| ||| |||||||| | || || || | || || || | ||| || Sbjct 16132034 TCCTGAATCTTGTATTTGACATTTTCTACGGTGTC-CGAGCTCTCCACCTCGAGAGTGAT 16131976 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || | ||||| ||||| ||||||||| Sbjct 16131975 GCTCTTCCCAGTTACAGTCTTCACAAAAATCTGCATT 16131939 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | || |||||||| || ||||| | |||||| || || | | | || Sbjct 16199958 CGCAGGACAAGATGAAGAGTAGACTCCTTCTGAACATTATAGTCCGACAAGGTGCGTCCA 16199899 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || | || ||||| ||||||||||| || || || ||| || || || |||||| Sbjct 16199898 TCCTGCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGAAACCAGGGGATACCCTCCTTA 16199839 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || |||||||| ||| |||||||| | || || || | || || || | ||| || Sbjct 16199838 TCCTGAATCTTGTATTTGACATTTTCTACGGTGTC-CGAGCTCTCCACCTCGAGAGTGAT 16199780 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || | ||||| ||||| ||||||||| Sbjct 16199779 GCTCTTCCCAGTTACAGTCTTCACAAAAATCTGCATT 16199743 >seq10 Length=13112115 Score = 109 bits (120), Expect = 1e-18 Identities = 169/235 (72%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | ||| || || || || ||||||| ||| ||||| || Sbjct 3659509 CCGCCCCTGAGACGGAGGACAAGGTGAAGCGTGGACTCCTTCTGTACATTGTAATCGGAA 3659568 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCT-GGAGG 82702 || | | |||| |||||||| || || |||| || ||||| |||| ||||| Sbjct 3659569 AGTGTGCGCTCGTCCCTGAGTTGTTTGCCTGCGAAGACAAGCCTTTGCTGATTGCGGAGG 3659628 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTA 82761 || || ||||| || || ||||| || || ||||| |||| || ||| || | || | Sbjct 3659629 -ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTGGCAATGGTGTCAG-AGTTCTCGA 3659686 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT-TATTA 82815 | || | ||| || |||||||| || | ||||| |||||||||||||| ||||| Sbjct 3659687 CCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTTCACAAATATCTGCATCTATTA 3659741 Score = 100 bits (110), Expect = 6e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || ||||| || ||||| | ||| ||||| ||| | | | Sbjct 3658436 CGGAGAACGAGGTGAAGGGTAGACTCCTTCTGCACATTGTAATCCCTGAGAGTGCGATTA 3658495 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || | || || ||||||||||| || || ||||| || | || || || |||||| Sbjct 3658496 TCCTCCAACTGCTTACCAGCAAAGATGAGCCTCTGTTGGTCGTGGGGAATGCCCTCCTTA 3658555 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| || || |||||||||||||| || || | || || || | ||| || Sbjct 3658556 TCCTGGATCTTAGCCTTCACATTTTCAATCGTGTC-GGAGCTCTCAACCTCAAGAGTAAT 3658614 Query 82775 CGTCTTGCCTGT 82786 ||||||||||| Sbjct 3658615 AGTCTTGCCTGT 3658626 >seq8 Length=13970067 Score = 107 bits (118), Expect = 4e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || ||||| ||||| || || ||||| | || | | || Sbjct 10823280 CGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCA 10823339 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| | | || || || || || || || ||||| Sbjct 10823340 TCCTCAAGCTGCTTCCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCCTCCTTG 10823399 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || |||||||| || || ||||| ||||| ||||| || | || || ||||| || || Sbjct 10823400 TCCTGAATCTTAGCCTTCACATTATCAATAGTATCGG-AGCTCTCAACCTCCAAGGTGAT 10823458 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || | ||||| ||||| || ||||| Sbjct 10823459 CGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 10823494 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || || | ||| || | ||| || || ||||| ||||| || ||||| || | Sbjct 10823952 CCACCCCTTAACCTCAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTATAGTCTGCA 10824011 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||||||||| | | || || || ||||| Sbjct 10824012 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCGGGAGGG 10824071 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || || ||||| || || || || || || || || || | || || Sbjct 10824072 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTC-GGAGCTCTCCAC 10824130 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | || || ||||| |||||||| Sbjct 10824131 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 10824178 >seq7 Length=14728688 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || ||||| ||||| || || || || | || | | ||| Sbjct 13850325 CGGAGCACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCG 13850266 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| || | || || || || || || || ||||| Sbjct 13850265 TCCTCGAGCTGCTTACCTGCAAAGATCAGACGCTGCTGGTCCGGTGGGATCCCCTCCTTG 13850206 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| || || ||||| || || || || || | || || || | || || Sbjct 13850205 TCCTGGATCTTCGCCTTGACATTGTCGATGGTGTCGG-AGCTCTCGACCTCGAGGGTGAT 13850147 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || | ||||| || || |||||||| Sbjct 13850146 CGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 13850111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981787838240731