Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq8 113 1e-19 seq7 107 5e-18 seq3 104 6e-17 seq12 96.9 8e-15 seq4 87.8 4e-12 >seq8 Length=13970067 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| | || ||||| || |||||||| |||| Sbjct 10824391 AAAACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACCATCGACAAT 10824332 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| |||||| || | ||||||||| Sbjct 10824331 GTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGGCTTATCTTC 10824272 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 10824271 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 10824212 Query 206365 ACTCTTCACCTTGTT 206379 || || ||||| ||| Sbjct 10824211 ACGCTCCACCTCGTT 10824197 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || || || | || ||||| || || ||||| |||| Sbjct 10823935 AAGACCCTCACGGGTAAGACTATTACCCTTGAGGTGGAGAGCTCCGACACCATCGATAAT 10823876 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || ||| ||||| || | || |||||| Sbjct 10823875 GTCAAGGCCAAGATTCAGGATAAGGAGGGCATTCCCCCGGATCAGCAGCGTCTGATCTTC 10823816 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | || ||||||||| ||||||||||||| Sbjct 10823815 GCCGGGAAGCAGCTCGAGGATGGCCGCACACTTGCGGATTACAACATCCAGAAAGAGTCC 10823756 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 || || ||||| || ||||| || Sbjct 10823755 ACCCTCCACCTCGTGTTGAGGCT 10823733 >seq7 Length=14728688 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| ||||| |||||||| | || ||||| || || ||||| |||| Sbjct 13849214 AAAACCCTCACCGGAAAGACGATCACCCTCGAGGTGGAGAGCTCCGACACCATCGACAAC 13849273 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| ||||| || | || |||||| Sbjct 13849274 GTTAAGGCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGATCAGCAGCGGCTCATCTTC 13849333 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 13849334 GCCGGGAAGCAGCTCGAGGACGGCCGAACCCTAGCCGACTACAACATCCAGAAGGAGTCG 13849393 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 13849394 ACCCTCCACCTTGT 13849407 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || |||||||| | || ||||| || || ||||| |||| Sbjct 13849442 AAAACCCTAACGGGGAAGACGATCACCCTTGAGGTGGAGAGCTCCGACACCATCGACAAT 13849501 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| ||||| || | || |||||| Sbjct 13849502 GTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGATCAGCAGCGTCTCATCTTC 13849561 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | ||||| |||||| |||| || || || Sbjct 13849562 GCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAAAAGGAATCC 13849621 Query 206365 ACTCTTCACCTTGT 206378 || ||||| ||||| Sbjct 13849622 ACCCTTCATCTTGT 13849635 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || |||||||| | || || || || || ||| Sbjct 13849886 CAGATCTTCGTCAAGACCCTAACGGGGAAGACGATCACCCTCGAGGTCGAGAGCTCCGAC 13849945 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| || Sbjct 13849946 ACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 13850005 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || ||| | || | ||||| |||||| || Sbjct 13850006 CGTCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGACGCACCCTCGCCGACTACAACATC 13850065 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || || ||||| || Sbjct 13850066 CAGAAGGAATCCACCCTCCACCTCGT 13850091 >seq3 Length=16781886 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| ||||| || |||||| | || || || || |||||| Sbjct 16131715 CAGATTTTTGTGAAGACCCTCACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTCTGAC 16131774 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| | ||| || |||||||| ||||||||||| | || || || Sbjct 16131775 ACAATTGAAAACCTGAAGGGTAAAATTCAAGACAAAGAAGGAATCCTTCCCGATCAGCAG 16131834 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || ||||| ||||| ||||| |||| || | || |||||| || Sbjct 16131835 CGGCTCATATTTGCTGGGAAGCAATTGGAGGATGGCCGGACCTTATCAGAGTACAACATC 16131894 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || ||||| || ||||| Sbjct 16131895 CAAAAGGAGTCCACCCTTCA 16131914 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| ||||| || |||||| | || || || || |||||| Sbjct 16199519 CAGATTTTTGTGAAGACCCTCACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTCTGAC 16199578 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| | ||| || |||||||| ||||||||||| | || || || Sbjct 16199579 ACAATTGAAAACCTGAAGGGTAAAATTCAAGACAAAGAAGGAATCCTTCCCGATCAGCAG 16199638 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || ||||| ||||| ||||| |||| || | || |||||| || Sbjct 16199639 CGGCTCATATTTGCTGGGAAGCAATTGGAGGATGGCCGGACCTTATCAGAGTACAACATC 16199698 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || ||||| || ||||| Sbjct 16199699 CAAAAGGAGTCCACCCTTCA 16199718 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | || ||||| |||||||||||||| ||||| ||||||||||| | ||| || Sbjct 16132160 CGAAGGCGCAGGACAAGATGAAGAGTAGACTCCTTCTGAACATTATAGTCCGACAAGGTG 16132101 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGAAA 204858 | |||||| | |||||| || || || ||||| |||| || ||||| Sbjct 16132100 CGTCCATCCTGCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGAAA 16132054 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | || ||||| |||||||||||||| ||||| ||||||||||| | ||| || Sbjct 16199964 CGAAGGCGCAGGACAAGATGAAGAGTAGACTCCTTCTGAACATTATAGTCCGACAAGGTG 16199905 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGAAA 204858 | |||||| | |||||| || || || ||||| |||| || ||||| Sbjct 16199904 CGTCCATCCTGCAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGAAA 16199858 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || || || |||||| | ||| Sbjct 16131043 AAGACTCTCACCGGCAAGACCATCACTTTGGAGGTTGAGAGCTCCGACACAATTGAAAAT 16131102 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| |||||| || || |||||||| Sbjct 16131103 GTGAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTTATCTTT 16131162 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | || || || | || | | || |||||| |||| || ||||| Sbjct 16131163 GCTGGTAAACAACTCGAGGACGGCCGCACACTCTCAGAGTACAACATCCAAAAGGAGTCA 16131222 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 16131223 ACCCTCCACCTCGT 16131236 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || || || |||||| | ||| Sbjct 16198847 AAGACTCTCACCGGCAAGACCATCACTTTGGAGGTTGAGAGCTCCGACACAATTGAAAAT 16198906 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| |||||| || || |||||||| Sbjct 16198907 GTGAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGAGGCTTATCTTT 16198966 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | || || || | || | | || |||||| |||| || ||||| Sbjct 16198967 GCTGGTAAACAACTCGAGGACGGCCGCACACTCTCAGAGTACAACATCCAAAAGGAGTCA 16199026 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 16199027 ACCCTCCACCTCGT 16199040 >seq12 Length=12612916 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| || || ||||| |||| Sbjct 12401258 AAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGAGCTCCGACACGATCGACAAC 12401317 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || || || || || |||||| || | || ||||| Sbjct 12401318 GTCAAAGCTAA-GATCCAGGACAAGGAGGGCATCCCACCGGACCAGCAGCGGCTCATCTT 12401376 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| ||||||||||| || || | ||| |||| || |||||| ||||||| || || Sbjct 12401377 CGCCGGTAAGCAGTTGGAGGACGGCCGCACTCTGGCGGACTACAACATCCAGAAGGAATC 12401436 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| ||| | | ||||| Sbjct 12401437 AACCCTCCACCTGGTTCTCCGCCTTCG 12401463 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| | || || || || ||| Sbjct 12401018 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGAC 12401077 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||| || || || || || || || ||||||| || Sbjct 12401078 ACCATCGACAATGTTAAGGCAAAAATCCAGGACAAGGAGGGGATCCCGCCGGACCAGCAG 12401137 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| ||||||||||| || || | ||| |||| || |||||| || Sbjct 12401138 CGTCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACTCTGGCGGACTACAACATC 12401197 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 12401198 CAGAAGGAGTCGACGCTCCACCTCGT 12401223 >seq4 Length=15584765 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || ||||| || ||| Sbjct 384311 CAGATCTTTGTGAAGACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCCTCGGAC 384370 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||| || || || ||||| || || || || Sbjct 384371 ACGATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGGATCCCCCCCGATCAGCAG 384430 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || ||||| | || | ||||| |||||| || Sbjct 384431 CGCCTCATCTTCGCCGGGAAGCAGCTCGAGGATGGGCGAACCCTAGCCGACTACAACATC 384490 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 384491 CAGAAGGAGTCGACGCTCCACCTCGT 384516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181773420434809