Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-19 seq8 95.1 1e-14 seq4 87.8 2e-12 seq10 82.4 6e-11 seq3 82.4 6e-11 >seq7 Length=14728688 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 13849623 GTGGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCG 13849564 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| |||||||| || | ||||| || || ||||||| ||| Sbjct 13849563 GCGAAGATGAGACGCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTC 13849504 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || || | || ||||| || ||| Sbjct 13849503 ACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTT 13849444 Query 27231 TTCACAAAGATTTGCATA 27248 ||||| ||||| |||||| Sbjct 13849443 TTCACGAAGATCTGCATA 13849426 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 13850079 GTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCG 13850020 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 13850019 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 13849960 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | || ||||| || || Sbjct 13849959 ACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTC 13849900 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 13849899 TTGACGAAGATCTGCAT 13849883 >seq8 Length=13970067 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||| || |||||| | | |||| | || || ||||| || || Sbjct 10823526 GTGGACTCCTTTTGAATGTTATAGTCGGCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCC 10823585 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | ||||| || || ||||| |||| Sbjct 10823586 GCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTCGCTTTC 10823645 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | |||||| || || || || | ||||| || || || Sbjct 10823646 ACGTTATCAATGGTGTCCGAGCTTTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 10823705 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 10823706 TTCACAAAGATCTGCAT 10823722 >seq4 Length=15584765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || ||||||||| | | | ||| | || |||||||| || || Sbjct 384505 CGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGCCCATCCTCGAGCTGCTTCCC 384446 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||| ||||| ||||| || || | || || || || |||||| || Sbjct 384445 GGCGAAGATGAGGCGCTGCTGATCGGGGGGGATCCCTTCCTTGTCCTGGATCTTTGCCTT 384386 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | ||||| | || || || || || || || | || ||||| || || Sbjct 384385 CACATTGTCGATCGTGTCCGAGGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGT 384326 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 384325 CTTCACAAAGATCTGCAT 384308 >seq10 Length=13112115 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/201 (69%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || | |||||||| || |||||||||| ||||||||||| || Sbjct 3659307 CGTCGACTCCTTCTGGACGTTGTAGTCAGACAAAGTGCGCTCGTCATCGAGCTGTTTGCC 3659366 Query 27110 GGCGTAAATGAGAC---GCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTT 27166 | | ||||| | |||| ||||||| || | ||||| ||||| ||||||| Sbjct 3659367 ACCAAAGATGAGCCTTTGCTGATGATCCGAAGGAATGCCCTCCTTATCCTGGATCTTGGC 3659426 Query 27167 TTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226 || | | | | ||||| | | || || || ||||| |||| ||||| || || Sbjct 3659427 CTTAACATTGGCAATGGTGTCAGAGTTGTCGACCTCAAGAGTAATAGTCTTGCCAGTGAG 3659486 Query 27227 AGTTTTCACAAAGATTTGCAT 27247 || ||||||||||| ||||| Sbjct 3659487 GGTCTTCACAAAGATCTGCAT 3659507 >seq3 Length=16781886 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| |||| ||||||||| || || | |||| ||||| ||||| || Sbjct 16131452 GTTGATTCTTTCTGAACATTGTAGTCCGACAGAGTGTGACCGTCCTCGAGTTGTTTGCCT 16131393 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | || ||||||| || | ||||| || || ||||||| || Sbjct 16131392 GCAAAGATGAGCCTTTGCTGATCCGAGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 16131333 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||||| | | ||||| || | || || | || || || ||||| Sbjct 16131332 ACGTTTTCGATCGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTC 16131273 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 16131272 TTTACAAAGATTTGCATA 16131255 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| |||| ||||||||| || || | |||| ||||| ||||| || Sbjct 16199256 GTTGATTCTTTCTGAACATTGTAGTCTGACAGAGTGTGACCGTCCTCGAGTTGTTTGCCT 16199197 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | || ||||||| || | ||||| || || ||||||| || Sbjct 16199196 GCAAAGATGAGCCTTTGCTGATCCGAGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 16199137 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||||| | | ||||| || | || || | || || || ||||| Sbjct 16199136 ACGTTTTCGATCGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTC 16199077 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 16199076 TTTACAAAGATTTGCATA 16199059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424918195259448