Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq433 93.3 1e-13 seq21 93.3 1e-13 >seq433 Length=30188 Score = 93.3 bits (102), Expect = 1e-13 Identities = 127/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| |||||| || ||||| || || ||||| || | || || |||| ||| Sbjct 24084 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCGTCTTCTTCTCCGGCTCCTT 24143 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 || ||||||||||| | || ||||| || || |||| ||| || ||||| |||| Sbjct 24144 CTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACG 24202 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 | || ||| || |||||||| | || |||||||||||||| || |||||| || Sbjct 24203 AGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCC 24258 >seq21 Length=10645290 Score = 93.3 bits (102), Expect = 1e-13 Identities = 127/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| |||||| || ||||| || || ||||| || | || || |||| ||| Sbjct 999305 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCGTCTTCTTCTCCGGCTCCTT 999364 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 || ||||||||||| | || ||||| || || |||| ||| || ||||| |||| Sbjct 999365 CTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACG 999423 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 | || ||| || |||||||| | || |||||||||||||| || |||||| || Sbjct 999424 AGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCC 999479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588272323113405