Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq433 120 4e-22 seq21 120 4e-22 seq13 111 2e-19 seq22 109 7e-19 seq3 105 8e-18 seq300 102 1e-16 seq2 102 1e-16 seq336 93.3 5e-14 seq647 87.8 2e-12 >seq433 Length=30188 Score = 120 bits (132), Expect = 4e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 24231 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 24172 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || ||||||||||||| ||||| || || Sbjct 24171 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCA 24112 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 || || || | ||||| |||||||||||| Sbjct 24111 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 24081 >seq21 Length=10645290 Score = 120 bits (132), Expect = 4e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 999452 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 999393 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || ||||||||||||| ||||| || || Sbjct 999392 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCA 999333 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 || || || | ||||| |||||||||||| Sbjct 999332 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 999302 >seq13 Length=11759267 Score = 111 bits (122), Expect = 2e-19 Identities = 116/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| ||||| | || |||||| || || |||||||| || Sbjct 1165048 GTGGAGGCCCTCGTCGCGGGAGATAAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 1164989 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || || ||| | || |||||||||||| ||||| ||||| Sbjct 1164988 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACACA 1164932 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 || || || | ||||| ||||||||||||| Sbjct 1164931 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAGC 1164900 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| |||| || |||| | || || || |||||| || || |||||||| || Sbjct 9967758 GTGGAGGCCCTTGTCGTGGGAGACGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 9967817 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || || ||| | || |||||||||||| ||||| || || Sbjct 9967818 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 9967874 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 || || || | ||||| |||||||| |||| Sbjct 9967875 GGCGAAGGCGACGAGGCGCTCGGCGAAAGAGC 9967906 >seq22 Length=10398566 Score = 109 bits (120), Expect = 7e-19 Identities = 220/322 (68%), Gaps = 6/322 (2%) Strand=Plus/Minus Query 11496 CGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGG 11555 ||||||||||||| ||||| || | ||| || || | || || ||||||||||| | Sbjct 1625213 CGCGATTAGTGGCAGCAATCACAATAATACCGGTGTTTCCTTCGAACCCATCCATCTCAG 1625154 Query 11556 TGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT-GGCATACCACCAGCACTG 11614 | | | ||||| | ||| ||||||||||||||||| || | | | || | || Sbjct 1625153 TCAAAAGCTGATTTAGTGTCTGTTCTCTCTCATCATTCCCTCCACCGATC-CCTGTACCT 1625095 Query 11615 CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG 11674 | |||| | || || ||||| |||||||||| || || || || || ||| || Sbjct 1625094 CTTTGCCTCCCGACTGCATCGATCTCATCAACAAACACTATGCAAGGGGCATTCTCTTTT 1625035 Query 11675 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAG 11734 || | | || || ||||| || | | |||||| ||||| ||||||||||| ||||| Sbjct 1625034 GCCTTCTTGAAAAGGTCGCGGACACGTGAGGCACCGACACCCACAAACATCTCTACAAAT 1624975 Query 11735 TTTGCGGCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGA 11792 | | | || | | | | ||||||||| || |||||| || || || ||| | Sbjct 1624974 TCAGATCCCGA--AATAGAAAAGAATGGGACCCCTGCTTCACCTGCAATTGCCTTGGCTA 1624917 Query 11793 GGAGGGTCTTTCCCGTACCTGG 11814 | | ||||| || || ||||| Sbjct 1624916 GCAAAGTCTTCCCAGTTCCTGG 1624895 >seq3 Length=16781886 Score = 105 bits (116), Expect = 8e-18 Identities = 115/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| ||||| | || |||||| || || |||||||| || Sbjct 8692730 GTGGAGGCCCTCGTCGCGGGAGATAAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 8692789 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || || ||| | || |||||||||||| || || ||||| Sbjct 8692790 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCGTCGACACA 8692846 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 || || || | ||||| ||||||||||||| Sbjct 8692847 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAGC 8692878 >seq300 Length=35074 Score = 102 bits (112), Expect = 1e-16 Identities = 114/152 (75%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| |||||||| ||||| || || | || |||||| || || |||||||| || Sbjct 28737 GTGGAGGCCCTCATCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 28796 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || || ||| | || |||||||||||| ||||| || | Sbjct 28797 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGTA 28853 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 || || || | ||||| ||||||||||||| Sbjct 28854 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAGC 28885 >seq2 Length=17334668 Score = 102 bits (112), Expect = 1e-16 Identities = 114/152 (75%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 14397001 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 14396942 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || || ||| | || |||||||||||| ||||| || || Sbjct 14396941 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 14396885 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 || || || | ||||| |||||||| |||| Sbjct 14396884 GGCGAAGGCGACGAGGCGCTCGGCGAAAGAGC 14396853 >seq336 Length=33712 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || | || |||||| || || |||||||| || Sbjct 19094 GTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 19035 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || || ||| | || |||||||||||| ||||| || || Sbjct 19034 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 18978 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 || || || | | ||| ||||||||| ||| Sbjct 18977 GGCGAAGGCGACGAAGCGCTCGGCGAAGAAGC 18946 >seq647 Length=24519 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || | || |||||| || || ||||||| || Sbjct 9977 GTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGAGCATGAGGCC 10036 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||| | ||| | || || ||| | || |||||||||||| ||||| || || Sbjct 10037 ATTCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 10093 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 ||||| || | ||||| |||||||| |||| Sbjct 10094 GGCAAAGGCGACGAGGCGCTCGGCGAAAGAGC 10125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628007436098400