Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq433 132 6e-26 seq21 132 6e-26 seq2 120 4e-22 seq22 113 6e-20 seq336 111 2e-19 seq300 111 2e-19 seq647 98.7 1e-15 >seq433 Length=30188 Score = 132 bits (146), Expect = 6e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 24231 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 24172 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || || ||||| |||||||||| ||||| || || Sbjct 24171 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCA 24112 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 ||||| || | ||| ||||| || |||||| Sbjct 24111 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 24081 >seq21 Length=10645290 Score = 132 bits (146), Expect = 6e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 999452 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 999393 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || || ||||| |||||||||| ||||| || || Sbjct 999392 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACGCCCTCGACGCA 999333 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 ||||| || | ||| ||||| || |||||| Sbjct 999332 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 999302 >seq2 Length=17334668 Score = 120 bits (132), Expect = 4e-22 Identities = 120/155 (77%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| || || |||||| || || |||||||| || Sbjct 14397001 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 14396942 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || | ||||| ||||||||| ||||| || || Sbjct 14396941 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 14396885 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGG 130181 ||||| || | ||| ||||| || || |||| || Sbjct 14396884 GGCGAAGGCGACGAGGCGCTCGGCGAAAGAGCAGG 14396850 >seq22 Length=10398566 Score = 113 bits (124), Expect = 6e-20 Identities = 220/318 (69%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAG 14210 ||||||||||||||||| | ||| || |||||||| || ||||| || || || ||| | Sbjct 8185040 AAGCCATCCATCTCAGTGAGGAGCTGGTTGATGGTCTGCTCGCGCTCGTCGTTGCCGCCG 8185099 Query 14211 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | | ||||| | ||| || ||||||||||| || || |||||||| ||||| | Sbjct 8185100 CCGAGC--CCCGCCCCGCGCTGGCGGCCGACGGCGTCGATCTCGTCGATGAAGACGATGC 8185157 Query 14271 ATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 | || | || || ||| || |||| || || || | ||| ||||| || Sbjct 8185158 A-GGGGGCCTTGGACTTGGCCTTCTCGAAGAGGTCCCGGACGCGGGAGGCGCCGACGCCG 8185216 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 || || | ||| || || | || ||||| || || |||||||||| | || || Sbjct 8185217 ACGAAGAGCTCGACGAATTCGGAGGCGGCGCAGGAGAAGAAGGGGACGCCGGCCTCGCCG 8185276 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCA 14449 |||| ||| |||||||| |||||||| || || || || || |||| | |||| | Sbjct 8185277 GCGACGGCGCGGGCGAGCAGGGTCTTGCCGGTGCCGGGGGGGCCGACGAGGA-GGCAGCC 8185335 Query 14450 CGT-GGGATCCTGGCACC 14466 | | |||||| |||| || Sbjct 8185336 CTTGGGGATCTTGGCGCC 8185353 >seq336 Length=33712 Score = 111 bits (122), Expect = 2e-19 Identities = 118/155 (76%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| | || |||||| || || |||||||| || Sbjct 19094 GTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 19035 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || | ||||| ||||||||| ||||| || || Sbjct 19034 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 18978 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGG 130181 ||||| || | || ||||| || ||| ||| || Sbjct 18977 GGCGAAGGCGACGAAGCGCTCGGCGAAGAAGCAGG 18943 >seq300 Length=35074 Score = 111 bits (122), Expect = 2e-19 Identities = 118/155 (76%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| ||||| || ||||||||||| | || |||||| || || |||||||| || Sbjct 28737 GTGGAGGCCCTCATCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 28796 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || | ||||| ||||||||| ||||| || | Sbjct 28797 ACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGTA 28853 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGG 130181 ||||| || | ||| ||||| || ||||||| || Sbjct 28854 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAGCAGG 28888 >seq647 Length=24519 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| | || |||||| || || ||||||| || Sbjct 9977 GTGGAGGCCCTCGTCGCGGGAGATGAGCTTGTTGGAGAAGGTGAGCCCGAGCATGAGGCC 10036 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||| | |||||| || || || | ||||| ||||||||| ||||| || || Sbjct 10037 ATTCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCCGGAGAAGAAG---CCCTCGACGCA 10093 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGG 130181 || || || | ||| ||||| || || |||| || Sbjct 10094 GGCAAAGGCGACGAGGCGCTCGGCGAAAGAGCAGG 10128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618411011453240