Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq433 149 7e-31 seq21 149 7e-31 seq13 138 1e-27 seq3 134 2e-26 seq2 129 7e-25 seq336 123 3e-23 seq300 120 4e-22 seq22 120 4e-22 seq647 116 4e-21 seq3066 87.8 2e-12 >seq433 Length=30188 Score = 149 bits (164), Expect = 7e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| |||| || || || || ||||| |||||||||| || ||| Sbjct 24082 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCGTCTTCTTCTCCGGCTCC 24141 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 24142 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 24201 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 24202 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 24231 >seq21 Length=10645290 Score = 149 bits (164), Expect = 7e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| |||| || || || || ||||| |||||||||| || ||| Sbjct 999303 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCGTCTTCTTCTCCGGCTCC 999362 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 999363 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 999422 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 999423 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 999452 >seq13 Length=11759267 Score = 138 bits (152), Expect = 1e-27 Identities = 121/150 (81%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| |||| || || ||||| ||||| ||||||||| || ||| Sbjct 1164902 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGTGTCGAGGG---CTTCTTCTCCGGCTCC 1164958 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| || || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 1164959 TGCTGAGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAAC 1165018 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||||| || |||||||| |||||| Sbjct 1165019 AAGCTTATCTCCCGCGACGAGGGCCTCCAC 1165048 Score = 116 bits (128), Expect = 4e-21 Identities = 116/150 (77%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||| ||| |||| || || || || ||||| ||||||||| || ||| Sbjct 9967904 TCTTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGG---CTTCTTCTCCGGCTCC 9967848 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| || || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 9967847 TGCTGAGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAAC 9967788 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| |||| | ||| |||| |||||| Sbjct 9967787 GAGCTCGTCTCCCACGACAAGGGCCTCCAC 9967758 >seq3 Length=16781886 Score = 134 bits (148), Expect = 2e-26 Identities = 120/150 (80%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| |||| || || ||||| || || ||||||||| || ||| Sbjct 8692876 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGTGTCGACGG---CTTCTTCTCCGGCTCC 8692820 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| || || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 8692819 TGCTGAGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAAC 8692760 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||||| || |||||||| |||||| Sbjct 8692759 AAGCTTATCTCCCGCGACGAGGGCCTCCAC 8692730 >seq2 Length=17334668 Score = 129 bits (142), Expect = 7e-25 Identities = 119/150 (79%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||| ||| |||| || || || || ||||| ||||||||| || ||| Sbjct 14396855 TCTTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGG---CTTCTTCTCCGGCTCC 14396911 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| || || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 14396912 TGCTGAGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAAC 14396971 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 14396972 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 14397001 >seq336 Length=33712 Score = 123 bits (136), Expect = 3e-23 Identities = 126/163 (77%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 94784 CAAAGTCGCGTTC--CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 94841 ||||| ||| | | ||| || ||||| || |||| || || || || ||||| ||| Sbjct 18935 CAAAGCCGCCTGCTTCTTCGCCGAGCGCTTCGTCGCCTTCGCCTGCGTCGAGGG---CTT 18991 Query 94842 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 94901 |||||| || |||| ||| || || | |||||||||||||| || |||||||| || || Sbjct 18992 CTTCTCCGGCTCCTGCTGAGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCT 19051 Query 94902 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 | |||||||||| |||| ||||| || |||||||| |||||| Sbjct 19052 CACCTTCTCCAACAAGCTCATCTCCCGCGACGAGGGCCTCCAC 19094 >seq300 Length=35074 Score = 120 bits (132), Expect = 4e-22 Identities = 117/150 (78%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| |||| || || | || ||||| ||||||||| || ||| Sbjct 28883 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTACGTCGAGGG---CTTCTTCTCCGGCTCC 28827 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| || || | |||||||||||||| || |||||||| || ||| |||||||||| Sbjct 28826 TGCTGAGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAAC 28767 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||| ||||| || || ||||| |||||| Sbjct 28766 AAGCTCATCTCCCGCGATGAGGGCCTCCAC 28737 >seq22 Length=10398566 Score = 120 bits (132), Expect = 4e-22 Identities = 231/331 (70%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 9563 ATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCAT 9620 || ||| ||||||| || || || || |||| |||||| |||||| || | || |||| Sbjct 1625220 ATGTCAGCGCGATTAGTGGCAGCAATCACAATAATACCGGTGTTTCCTT--CGAACCCAT 1625163 Query 9621 CCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCA 9679 ||||||| |||||||| || || | || ||||| | ||||||||| || | | | Sbjct 1625162 CCATCTCAGTCAAAAGCTGATTTAGTGTCTGTTCTCTCTCATCATTCCCTCCACCGATC- 1625104 Query 9680 CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGA 9739 || | || | |||| | || || ||||| |||||||||| || || ||||| || | Sbjct 1625103 CCTGTACCTCTTTGCCTCCCGACTGCATCGATCTCATCAACAAACACTATGCAAGGGGCA 1625044 Query 9740 TTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACAT 9798 || || | | ||| ||| || || || ||||| ||| || ||||| |||||||| Sbjct 1625043 TTCTCTTTTGCCTTCTTGAAA-AGGTCGCGGACACGTGAGGCACCGACACCCACAAACAT 1624985 Query 9799 CTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGG 9857 ||| ||||| | | | ||| || | | ||| ||||| | |||||| ||||| | Sbjct 1624984 CTCTACAAATTCAGATCCCGAA-ATAGAAAAGAATGGGACCCCTGCTTCACCTGCAATTG 1624926 Query 9858 CTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | ||| || | |||||| || || ||||| Sbjct 1624925 CCTTGGCTAGCAAAGTCTTCCCAGTTCCTGG 1624895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 216/321 (67%), Gaps = 14/321 (4%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG-- 9671 || ||||||||||| || | || ||||| || || || || || || || || || | Sbjct 8185040 AAGCCATCCATCTCAGTGAGGAGCTGGTTGATGGTCTGCTCGCGCTCGTCGTT-GCCGCC 8185098 Query 9672 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 || | | || || | ||| || || ||||| || ||||| || ||||||||||||| Sbjct 8185099 GCCGAGCCCC-GCCCCGCGCTGGCGGCCGACGGCGTCGATCTCGTCGATGAAGACGATGC 8185157 Query 9732 ATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 | || ||| || || | || ||||| ||||| || || |||||| || Sbjct 8185158 AGGGGGCCTTGGACTTGGCCTTC----TCGAAGAGGTCCCGGACGCGGGAGGCGCCGACG 8185213 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 || || || | ||| || || | | ||||| || || ||||||||| | || Sbjct 8185214 CCGACGAAGAGCTCGACGAATTCGGAGGCGGCGCAGGAGAAGAAGGGGACGCCGGCCTCG 8185273 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 || || | ||| |||||||| || ||||| || || || || || |||||||| || Sbjct 8185274 CCGGCGACGGCGCGGGCGAGCAGGGTCTTGCCGGTGCCGGGGGGGCCGACGAGGAGG-CA 8185332 Query 9908 CCTCGTGGA-ATCTTGGCGCC 9927 | | ||| ||||||||||| Sbjct 8185333 GCCCTTGGGGATCTTGGCGCC 8185353 >seq647 Length=24519 Score = 116 bits (128), Expect = 4e-21 Identities = 116/150 (77%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||| ||| |||| ||||| || || ||||| ||||||||| || ||| Sbjct 10123 TCTTTCGCCGAGCGCCTCGTCGCCTTTGCCTGCGTCGAGGG---CTTCTTCTCCGGCTCC 10067 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| || || | |||||||||||| || ||||||| || ||| |||||||||| Sbjct 10066 TGCTGAGCCATCTTCTGGCTCAAGAAGAATGGCCTCATGCTCGGGCTCACCTTCTCCAAC 10007 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||| ||||| || |||||||| |||||| Sbjct 10006 AAGCTCATCTCCCGCGACGAGGGCCTCCAC 9977 >seq3066 Length=58449 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/150 (73%), Gaps = 11/150 (7%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| ||| || || | || ||||| ||||||||| || ||| Sbjct 42304 TCCTTCGCCGAGCGCCTCGCCGCCTTCGCCCGCGTCGAGGG---CTTCTTCTCCGGCTCC 42360 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| || || | ||||||||| ||| ||| | || ||| |||||||||| Sbjct 42361 TGCTGAGCCATCTTCTGGCTCAAGGAGC--------ATGGCCGGGCTCACCTTCTCCAAC 42412 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| | ||| ||||||||||| | |||| Sbjct 42413 GAGCTCACCTCCCGTGACGAGGGCCGCCAC 42442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583237987211960