Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq21 185 1e-41 seq433 176 5e-39 seq2 129 6e-25 seq336 122 1e-22 seq13 120 3e-22 seq3 120 3e-22 seq647 114 1e-20 seq300 114 1e-20 >seq21 Length=10645290 Score = 185 bits (204), Expect = 1e-41 Identities = 404/594 (68%), Gaps = 16/594 (3%) Strand=Plus/Plus Query 59536 CGCCGAGCACCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGGCCCTGT 59595 |||||||| | | || ||| | | ||||| || |||| ||||| | |||| | | Sbjct 998863 CGCCGAGCGCGGATCGGTTCTCGATGTTTCCGATCCGGTTCCCGGGCATCTGGGAGTTCT 998922 Query 59596 ATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGA 59655 | ||||| || | | || |||||| ||| ||||||| | |||||| |||| ||||| Sbjct 998923 ACAAGAAGGCCGTGGCGTCGTTCTGGACCGCCGAGGAGGTGGACCTCTCCGGCGACCTCC 998982 Query 59656 AGGATTGGGA---CAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | | ||||| | |||| |||||| | || ||| || || || |||| Sbjct 998983 GGCACTGGGAGCTCGCGCTCTCCGGCGACGACCGGCGGTTCGTCTCCCACGTGCTCGCCT 999042 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT---TCCAAGG 59769 ||||||| || || || || || | || || | | | ||| ||| ||| Sbjct 999043 TCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCTCCCGCTTCATGTCCGAGG 999102 Query 59770 ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATC 59828 ||||| | ||||||||||| | ||||||| | ||| ||| | |||| ||| Sbjct 999103 ---TCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCG-ATCGAGAACATC 999158 Query 59829 CACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCT 59888 ||||| |||| |||||| ||| | |||| | | || || || ||||||| Sbjct 999159 CACTCGGAGATGTACTCCCTCCTCCTCGAGACCTACATCCGCGACCCCCTCGAGAAGGAC 999218 Query 59889 GGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | || ||||| ||| | || || |||||| || || | || || | ||||| | Sbjct 999219 CGCCTCTTCCGCGCCGTCGACACCGTCCCCTGC-GTCGCCCGCAAGGCCGCGTGGGCGCT 999277 Query 59948 GCAGTGGATG-AGTCCTG-GA-GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGT 60004 || ||||| ||||| || || || || || | || ||| | || || || ||||| Sbjct 999278 GCGCTGGATCCAGTCCCCCGACGCCTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGT 999337 Query 60005 GGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 || || |||||||||| ||||| ||||| || || ||||||||||| ||||| ||||| Sbjct 999338 CGAGGGCGTCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCT 999397 Query 60065 CATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||| ||||| | |||||||||||||| || ||||| |||||||||||||| Sbjct 999398 CATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCA 999451 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 60270 ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCA 60329 |||| |||||||| |||| ||||| ||||||||| | ||| | || | ||| Sbjct 999603 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGCG--CCA 999660 Query 60330 A--TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGA 60387 | | |||| ||| ||||| ||||||||||||||| |||||| | | || |||| Sbjct 999661 AGATGTACGCCGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAAGA 999720 Query 60388 CCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||| |||||||| ||||| || || Sbjct 999721 CCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 999751 >seq433 Length=30188 Score = 176 bits (194), Expect = 5e-39 Identities = 402/594 (68%), Gaps = 16/594 (3%) Strand=Plus/Plus Query 59536 CGCCGAGCACCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGGCCCTGT 59595 |||||||| | | || ||| | | || || || |||| ||||| | |||| | | Sbjct 23642 CGCCGAGCGCAGATCGGTTCTCGATGTTCCCGATCCGGTTCCCGGGCATCTGGGAGTTCT 23701 Query 59596 ATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGA 59655 | ||||| || | | || |||||| ||| ||||||| | |||||| |||| ||||| Sbjct 23702 ACAAGAAGGCCGTGGCGTCGTTCTGGACCGCCGAGGAGGTGGACCTCTCCGGCGACCTCC 23761 Query 59656 AGGATTGGGACAA---GCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | | ||||| |||| |||||| | || ||| || || || |||| Sbjct 23762 GGCACTGGGAGCTTGCGCTCTCCGGCGACGACCGGCGGTTCGTCTCCCACGTGCTCGCCT 23821 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGG--- 59769 ||||||| || || || || || | || || | | | ||| || || Sbjct 23822 TCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCTCCCGCTT---CATGGCCG 23878 Query 59770 ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATC 59828 | |||||| | ||||||||||| | ||||||| | ||| ||| | |||| ||| Sbjct 23879 AGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCG-ATCGAGAACATC 23937 Query 59829 CACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCT 59888 ||||| |||| |||||| ||| | |||| | | || || || ||||||| Sbjct 23938 CACTCGGAGATGTACTCCCTCCTCCTCGAGACCTACATCCGCGACCCCCTCGAGAAGGAC 23997 Query 59889 GGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | || ||||| ||| | || || |||||| || || | || || | ||||| | Sbjct 23998 CGCCTCTTCCGCGCCGTCGACACCGTCCCCTGC-GTCGCCCGCAAGGCCGCGTGGGCGCT 24056 Query 59948 GCAGTGGATG-AGTCCTG-GA-GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGT 60004 || ||||| ||||| || || || || || | || ||| | || || || ||||| Sbjct 24057 GCGCTGGATCCAGTCCCCCGACGCCTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGT 24116 Query 60005 GGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 || || |||||||||| ||||| ||||| || || ||||||||||| ||||| ||||| Sbjct 24117 CGAGGGCGTCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCT 24176 Query 60065 CATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||| ||||| | |||||||||||||| || ||||| |||||||||||||| Sbjct 24177 CATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCA 24230 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 60270 ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCA 60329 |||| |||||||| |||| ||||| ||||||||| | ||| | || | ||| Sbjct 24382 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGCCGCCCTCGGCTGCG--CCA 24439 Query 60330 A--TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGA 60387 | | |||| ||| ||||| ||||||||||||||| |||||| | | || |||| Sbjct 24440 AGATGTACGCCGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTCCAGGGCAAGA 24499 Query 60388 CCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||| |||||||| ||||| || || Sbjct 24500 CCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 24530 >seq2 Length=17334668 Score = 129 bits (142), Expect = 6e-25 Identities = 111/137 (81%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||| | || || || ||||| || || ||||||||| ||||| | ||| || || Sbjct 14396867 CGCCTCGTCGCCTTCGCCTGCGTCGAGGG---CTTCTTCTCCGGCTCCTGCTGAGCCATC 14396923 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||||||||||||||||| || || | |||||||||||||| || ||| Sbjct 14396924 TTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACGAGCTCATCTCC 14396983 Query 60102 CGGGACGAGGGCCTCCA 60118 || |||||||||||||| Sbjct 14396984 CGCGACGAGGGCCTCCA 14397000 >seq336 Length=33712 Score = 122 bits (134), Expect = 1e-22 Identities = 104/128 (81%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || || || ||||| || || ||||||||| ||||| | ||| || || ||||||||| Sbjct 18969 GCCTTCGCCTGCGTCGAGGG---CTTCTTCTCCGGCTCCTGCTGAGCCATCTTCTGGCTC 19025 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||||||||||||||| || || | ||||||||| |||| || ||||| |||||| Sbjct 19026 AAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACAAGCTCATCTCCCGCGACGAG 19085 Query 60111 GGCCTCCA 60118 |||||||| Sbjct 19086 GGCCTCCA 19093 >seq13 Length=11759267 Score = 120 bits (132), Expect = 3e-22 Identities = 109/137 (80%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||| | || || || || || || || ||||||||| ||||| | ||| || || Sbjct 1164914 CGCCTCGTCGCCTTCGCCTGTGTCGAGGG---CTTCTTCTCCGGCTCCTGCTGAGCCATC 1164970 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||||||||||||||||| || || | ||||||||| |||| || ||| Sbjct 1164971 TTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACAAGCTTATCTCC 1165030 Query 60102 CGGGACGAGGGCCTCCA 60118 || |||||||||||||| Sbjct 1165031 CGCGACGAGGGCCTCCA 1165047 Score = 114 bits (126), Expect = 1e-20 Identities = 108/137 (79%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||| | || || || ||||| || || ||||||||| ||||| | ||| || || Sbjct 9967892 CGCCTCGTCGCCTTCGCCTGCGTCGAGGG---CTTCTTCTCCGGCTCCTGCTGAGCCATC 9967836 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||||||||||||||||| || || | |||||||||||||| | ||| Sbjct 9967835 TTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACGAGCTCGTCTCC 9967776 Query 60102 CGGGACGAGGGCCTCCA 60118 | ||| |||||||||| Sbjct 9967775 CACGACAAGGGCCTCCA 9967759 >seq3 Length=16781886 Score = 120 bits (132), Expect = 3e-22 Identities = 109/137 (80%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||| | || || || || || || || ||||||||| ||||| | ||| || || Sbjct 8692864 CGCCTCGTCGCCTTCGCCTGTGTCGACGG---CTTCTTCTCCGGCTCCTGCTGAGCCATC 8692808 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||||||||||||||||| || || | ||||||||| |||| || ||| Sbjct 8692807 TTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACAAGCTTATCTCC 8692748 Query 60102 CGGGACGAGGGCCTCCA 60118 || |||||||||||||| Sbjct 8692747 CGCGACGAGGGCCTCCA 8692731 >seq647 Length=24519 Score = 114 bits (126), Expect = 1e-20 Identities = 108/137 (79%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||| | || ||||| ||||| || || ||||||||| ||||| | ||| || || Sbjct 10111 CGCCTCGTCGCCTTTGCCTGCGTCGAGGG---CTTCTTCTCCGGCTCCTGCTGAGCCATC 10055 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||| ||||||||||| || || | ||||||||| |||| || ||| Sbjct 10054 TTCTGGCTCAAGAAGAATGGCCTCATGCTCGGGCTCACCTTCTCCAACAAGCTCATCTCC 9995 Query 60102 CGGGACGAGGGCCTCCA 60118 || |||||||||||||| Sbjct 9994 CGCGACGAGGGCCTCCA 9978 >seq300 Length=35074 Score = 114 bits (126), Expect = 1e-20 Identities = 108/137 (79%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||| | || || || | ||| || || ||||||||| ||||| | ||| || || Sbjct 28871 CGCCTCGTCGCCTTCGCCTACGTCGAGGG---CTTCTTCTCCGGCTCCTGCTGAGCCATC 28815 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||||||||||||||||| || || | ||||||||| |||| || ||| Sbjct 28814 TTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGGCTCACCTTCTCCAACAAGCTCATCTCC 28755 Query 60102 CGGGACGAGGGCCTCCA 60118 || || ||||||||||| Sbjct 28754 CGCGATGAGGGCCTCCA 28738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548503345823760