Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq433 129 6e-25 seq23 98.7 1e-15 seq4 95.1 1e-14 seq14 89.7 6e-13 seq9 89.7 6e-13 seq7 89.7 6e-13 seq13 87.8 2e-12 seq3 87.8 2e-12 seq5 86.0 7e-12 seq2 82.4 8e-11 >seq433 Length=30188 Score = 129 bits (142), Expect = 6e-25 Identities = 262/381 (69%), Gaps = 11/381 (3%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 24188 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAG 24129 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924 |||| ||| ||||| || || |||||||| ||||| | ||||| | || |||| | | Sbjct 24128 AAGACGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGGCGTCGGGGGAC 24069 Query 74925 ---ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGC 74980 ||||| | | ||||| | || || || ||| |||||| || || |||| || Sbjct 24068 TGGATCCAGCGCAGCGCCCACGCGGCCTTGCGGGCGAC-GCAGGGGACGGTGTCGACGGC 24010 Query 74981 TTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTA 75040 ||||||||| ||||||| ||| || || | | || | | || ||||| Sbjct 24009 GCGGAAGAGGCGGTCCTTCTCGAGGGGGTCGCGGATGTAGGTCTCGAGGAGGAGGGAGTA 23950 Query 75041 CGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 | ||||||| || || |||| | ||| |||| | ||||||| | || ||||| | Sbjct 23949 CATCTCCGAGTGGATGTTCTCGATCG-CGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGG 23891 Query 75100 CAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGA 75157 | | ||| || || | |||| | ||| ||||| | |||||||||||| || Sbjct 23890 CGACCTGGACCTCGGCCATGAAGCGGGA--GGCGAGGTTCTCGAGGACGATGCCGTCGGA 23833 Query 75158 GGCGGCGAAAAAAGCCAGTAC 75178 ||||||||| || || || || Sbjct 23832 GGCGGCGAAGAAGGCGAGCAC 23812 >seq23 Length=7979763 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4384161 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4384102 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 4384101 TGAGCTACGAAAGCAA 4384086 >seq4 Length=15584765 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2947616 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2947557 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 2947556 TGAGCTACGAAAGC 2947543 >seq14 Length=11705491 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2918731 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2918672 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 2918671 TGAGCTACGAAAGC 2918658 >seq9 Length=13841557 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1167602 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1167543 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1167542 TGAGCTACGAAAGC 1167529 >seq7 Length=14728688 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1278654 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1278595 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1278594 TGAGCTACGAAAGC 1278581 >seq13 Length=11759267 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || ||||||||||| | ||| |||||||| ||| |||| || | || Sbjct 1165005 AGCCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCC---GGAG 1164949 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||| ||| |||||||| || |||||||| ||||| | ||||| Sbjct 1164948 AAGAAGCCCTCGACACAGGCGAAGGCGACGAGGCGCTCGGCGAA 1164905 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/104 (78%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || ||||||||||| | ||| |||||||| ||| |||| || | || Sbjct 9967801 AGCCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCC---GGAG 9967857 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||| ||| ||||| || || |||||||| ||||| | ||||| Sbjct 9967858 AAGAAGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA 9967901 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 10752382 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10752441 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 10752442 TGAGCTACGAGAGCA 10752456 >seq3 Length=16781886 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || ||||||||||| | ||| |||||||| ||| |||| || | || Sbjct 8692773 AGCCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCC---GGAG 8692829 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||| ||| |||||||| || |||||||| ||||| | ||||| Sbjct 8692830 AAGAAGCCGTCGACACAGGCGAAGGCGACGAGGCGCTCGGCGAA 8692873 >seq5 Length=15024279 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 5964865 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 5964924 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 5964925 TGAGCTATGAAAGC 5964938 >seq2 Length=17334668 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/104 (78%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || ||||||||||| | ||| |||||||| ||| |||| || | || Sbjct 14396958 AGCCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCTCAGCAGGAGCC---GGAG 14396902 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||| ||| ||||| || || |||||||| ||||| | ||||| Sbjct 14396901 AAGAAGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA 14396858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547194597014200