Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq8 91.5 1e-13 seq1443 82.4 7e-11 >seq8 Length=13970067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| |||| ||| | || | || |||||| ||| || || || || || ||||| Sbjct 10824180 CCTCCCCTTAGGCGAAGAACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 10824239 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| ||||| || || ||||| ||||||||||| | ||| Sbjct 10824240 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGCCGCTGCTGGTCCGGGGGA 10824299 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | || || |||||| ||| || |||| | | | || || ||| |||| Sbjct 10824300 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCT---CTCC 10824356 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || | ||||| | || || || || ||||| || ||||| ||||||| || Sbjct 10824357 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATCTGTA 10824411 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || ||||| | | ||| | || || ||| || || || || ||||| || Sbjct 10823948 CATGCCACCCCTTAACCTCAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTATAGTC 10824007 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || || |||| || ||||| ||||| ||||| || | ||||||||||||| Sbjct 10824008 TGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCGGG 10824067 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| || |||| ||| | | | || ||| || Sbjct 10824068 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCT 10824126 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| || | ||||| | || || || || ||||| ||||| || |||||| Sbjct 10824127 CCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCATC 10824179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || ||||| |||||||| || || | || |||||||| Sbjct 10823520 TGGAGGGTGGACTCCTTTTGAATGTTATAGTCGGCAAGGGTGCGGCCATCCTCAAGCTGC 10823579 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 |||||||| || || || ||||||||||| | || | || ||| |||||| Sbjct 10823580 TTGCCCGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 10823630 >seq1443 Length=10899 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || || ||||| || || |||| || | ||| Sbjct 8204 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGGCCGTCCTCCAACTGC 8263 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || |||||||||||||| | ||| | | ||| |||||| |||||| Sbjct 8264 TTGCCTGCGAAGATCAGACGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATTTTG 8323 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || ||| ||||| || || | ||||| | || || ||| Sbjct 8324 GCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 8383 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 8384 AGGGTCTTGACGAAGATCTGCAT 8406 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || || || || || || |||| || | ||| Sbjct 8432 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCGTCCTCCAACTGC 8491 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || | ||||||||||| | ||| | | ||| |||||| |||||| Sbjct 8492 TTGCCGGCGAAGATCAACCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATTTTG 8551 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || ||| |||||| || || | ||||| | || || ||| Sbjct 8552 GCCTTGACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTC 8611 Query 39262 AGCGTTTTAACAAAGATTTGCATCT 39286 || || || || ||||||||||||| Sbjct 8612 AGGGTCTTGACGAAGATTTGCATCT 8636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429529219412777