Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-25 seq7 98.7 7e-16 seq4 98.7 7e-16 seq8 93.3 3e-14 >seq3 Length=16781886 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| ||||| || ||||||||||| ||||| | | Sbjct 16131712 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTCT 16131771 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || |||||| ||||||||||| | | || ||||| Sbjct 16131772 GACACAATTGAAAACCTGAAGGGTAAAATTCAAGACAAAGAAGGAATCCTTCCCGATCAG 16131831 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | |||||||| || || ||| |||| || | || || ||| || |||||| Sbjct 16131832 CAGCGGCTCATATTTGCTGGGAAGCAATTGGAGGATGGCCGGACCTTATCAGAGTACAAC 16131891 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| |||||||| | ||||| ||| Sbjct 16131892 ATCCAAAAGGAGTCCACCCTTCATTTGGTT 16131921 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| ||||| || ||||||||||| ||||| | | Sbjct 16199516 ATGCAGATTTTTGTGAAGACCCTCACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTCT 16199575 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || |||||| ||||||||||| | | || ||||| Sbjct 16199576 GACACAATTGAAAACCTGAAGGGTAAAATTCAAGACAAAGAAGGAATCCTTCCCGATCAG 16199635 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | |||||||| || || ||| |||| || | || || ||| || |||||| Sbjct 16199636 CAGCGGCTCATATTTGCTGGGAAGCAATTGGAGGATGGCCGGACCTTATCAGAGTACAAC 16199695 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| |||||||| | ||||| ||| Sbjct 16199696 ATCCAAAAGGAGTCCACCCTTCATTTGGTT 16199725 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || ||||| || || ||||| || ||||| || | Sbjct 16131484 ATGCAGATTTTTGTCAAGACCCTTACCGGAAAGACCATAACTCTGGAGGTTGAGACCTCT 16131543 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||||||| ||||| ||||| | || |||| || Sbjct 16131544 GATACAATTGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCTCAGACCAG 16131603 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| ||||| || |||| | ||| | ||||||||| Sbjct 16131604 CAGAGGCTCATCTTTGCTGGCAAGCAACTCGAGGACGGGAGAACTCTGTCCGATTACAAT 16131663 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | || ||||| || || | ||| | ||| | | ||| |||| || Sbjct 16131664 GTTCAGAAAGAATCAACTCTCCATCTTGTTCTCCGTTTGAGAGGGGG 16131710 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || ||||| || || ||||| || ||||| || | Sbjct 16199288 ATGCAGATTTTTGTCAAGACCCTTACCGGAAAGACCATAACTCTGGAGGTTGAGACCTCT 16199347 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||||||| ||||| ||||| | || |||| || Sbjct 16199348 GATACAATTGAGAACGTCAAGGCAAAAATTCAGGACAAGGAAGGCATCCCCTCAGACCAG 16199407 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| ||||| || |||| | ||| | ||||||||| Sbjct 16199408 CAGAGGCTCATCTTTGCTGGCAAGCAACTCGAGGACGGGAGAACTCTGTCCGATTACAAT 16199467 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | || ||||| || || | ||| | ||| | | ||| |||| || Sbjct 16199468 GTTCAGAAAGAATCAACTCTCCATCTTGTTCTCCGTTTGAGAGGGGG 16199514 >seq7 Length=14728688 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| ||||| |||||||| ||||| || || | | Sbjct 13849199 ATGCAGATCTTCGTGAAAACCCTCACCGGAAAGACGATCACCCTCGAGGTGGAGAGCTCC 13849258 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || |||| | || || ||||| || || | || || ||||| Sbjct 13849259 GACACCATCGACAACGTTAAGGC-CAAGATCCAGGACAAGGAGGGGATTCCCCCGGATCA 13849317 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || ||||| || || || || |||| || || ||| ||| ||||| Sbjct 13849318 GCAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGAACCCTAGCCGACTACAA 13849377 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 13849378 CATCCAGAAGGAGTCGAC 13849395 >seq4 Length=15584765 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||||||||| || || ||||| || || || || ||| Sbjct 384305 AAGATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCC 384364 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | ||| || ||||| ||||| | || || || Sbjct 384365 TCGGACACGATCGACAATGTGAAGGC-AAAGATCCAGGACAAGGAAGGGATCCCCCCCGA 384423 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||||| | || || ||||| || || || || || | || || ||| ||| || Sbjct 384424 TCAGCAGCGCCTCATCTTCGCCGGGAAGCAGCTCGAGGATGGGCGAACCCTAGCCGACTA 384483 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 384484 CAACATCCAGAAGGAGTCGAC 384504 >seq8 Length=13970067 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||||||||| || || || || || || || || | | Sbjct 10823950 ATGCAGATTTTCGTGAAGACCCTCACGGGTAAGACTATTACCCTTGAGGTGGAGAGCTCC 10823891 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || || || || || | || || ||||| Sbjct 10823890 GACACCATCGATAATGTCAAGGCCAAGA-TTCAGGATAAGGAGGGCATTCCCCCGGATCA 10823832 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || || || || | ||||| | | |||||||| Sbjct 10823831 GCAGCGTCTGATCTTCGCCGGGAAGCAGCTCGAGGATGGCCGCACACTTGCGGATTACAA 10823772 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 10823771 CATCCAGAAAGAGTCCAC 10823754 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || ||||| || || || || | | Sbjct 10824406 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCT 10824347 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| ||||| | || || || || Sbjct 10824346 GACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCA 10824288 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| || || || |||| ||||| | | ||| ||||| Sbjct 10824287 GCAGCGGCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 10824228 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 10824227 CATCCAGAAGGAGTCCAC 10824210 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| || || |||||||| | || ||||| | | Sbjct 10823494 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACGATCACCTTGGAGGTTGAGAGCTCC 10823435 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | || | || | || ||||| || || | ||||| || || Sbjct 10823434 GATACTATTGATAATGTGAAGGCTAAGA-TTCAGGACAAGGAGGGGATTCCGCCGGACCA 10823376 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || || || || || || || | ||||| | | |||||||| Sbjct 10823375 GCAGCGTTTGATCTTCGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCGGATTACAA 10823316 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 10823315 CATCCAGAAGGAATCCAC 10823298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337996710109532