Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ananas_20comosus_20[refseq_20GCF_5F001540865.1_202016-03-14] 3,129 sequences; 382,055,938 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 113 6e-20 >seq5 Length=15024279 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | || || | |||| | |||| || ||| |||| ||| || Sbjct 11649875 ACCCCCTTGATCAACATAACGAGCAGTATCATTAAACACTCGCAGCATAGGAACAATCCC 11649816 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||||| || |||||||| ||| ||| ||||| ||| |||| ||||| || ||| || Sbjct 11649815 ATTAGAAGTCCCATTTGTCCCACGAATGTAACTCCCAGTTGCACGAATGTTGTGAATAGA 11649756 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || ||||||||||| || ||| | ||| || |||| ||||| || || Sbjct 11649755 AACACCAATTCCTCCTGCGGATTTGCTTATGACAGCACACTCCTTCAGAGTATCATAAAT 11649696 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| ||||| || || ||||| | |||||||||||| Sbjct 11649695 TCCCTCAATACTATCCTCTTTCATGCAGACAAGAAAACAGCT 11649654 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 77899 CTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAG 77958 || ||||||||| | || || |||||| ||| ||||| |||| | | || | Sbjct 11650653 CTTTTTCATATTTCATGTAGAGAGTTTCAAACTCACTACCCCAGCAATCAGCTAGACCTG 11650594 Query 77959 GGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGA 78018 | |||||| ||||| | ||||||||| | |||| |||| ||||||| ||| |||| Sbjct 11650593 GAGCTTCATTAGGGCAAAACAATGACCACTGTCCATTGTCCTGGACTCGTTCCATGAAGA 11650534 Query 78019 GATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||| | ||| || ||| ||| ||||||| | | |||||||| Sbjct 11650533 GATCAGGAACCCAGAGTGCATAAAAGAGATCTCTTGCACGGTGTTCTTC 11650485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694641629766560