Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 113 1e-19 seq6 104 5e-17 seq8 98.7 2e-15 seq7 98.7 2e-15 seq5 98.7 2e-15 seq4 98.7 2e-15 seq3 98.7 2e-15 seq1 98.7 2e-15 >seq2 Length=84732013 Score = 113 bits (124), Expect = 1e-19 Identities = 575/898 (64%), Gaps = 24/898 (3%) Strand=Plus/Plus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| |||||| ||| | || ||| || ||||| |||||||||||||| | ||| Sbjct 24868092 TCTGCATGTTCCCGATCAAGTACCCCTCGATCTGGGAGATGTACAAGAAGGCCGAGGCCT 24868151 Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAAC 229870 | ||||||||| | ||||| || ||| | | ||| || | ||||| | | | Sbjct 24868152 CGTTCTGGACCGCCGAGGAGGTCGATCTCAGCCAAGATATCCGCCACTGGGACCAAACCC 24868211 Query 229871 TCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATG 229930 | | | |||||| || || ||| ||| ||| |||| | || ||||| | |||||| | Sbjct 24868212 TAACCGCCGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACG 24868271 Query 229931 GTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGC 229988 | || || |||| || || || | || ||| || ||| || ||| | ||||| Sbjct 24868272 GCATCGTCCTGGAGAACCTCGCCGGCCG--TTTCATGAAGGAGGTCCAGGTCGCCGAGGC 24868329 Query 229989 ACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCT 230048 || || || | | ||| | || ||| ||||| || || || | ||| Sbjct 24868330 CAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAG--ATGTACTC- 24868386 Query 230049 GCTTATCGACGCG-CTTATTTCC--GACGAGCAAGAACGGAACGAGCTTTTTGATGCCAT 230105 |||| || || | || || ||| | ||| || | |||||| | ||||| Sbjct 24868387 GCTTCTCCTCGAATCCTACATCAAGGACTCCGATGAAAAGAGCCGCCTTTTTCACGCCAT 24868446 Query 230106 TGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGG 230165 || | |||||| || || ||||| ||||||| | ||| ||| | || ||| Sbjct 24868447 CGAGACCATCCCTTGCGTCGCCAAGAAGGCCGAGTGGGCGCTGAAGTGGATCGA---TGG 24868503 Query 230166 TAAA---TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTC 230222 | || || |||||| | | |||| | | || || ||||| ||| | || || Sbjct 24868504 CTCAGAGTCTTTCGCCGAGAGATTGATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTC 24868563 Query 230223 CGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCT 230282 |||||| || || ||||| || ||||| || || ||||||| || | | Sbjct 24868564 CGGGAGCTTTTGTGCCATTTTCTGGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTT 24868623 Query 230283 GTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTAT-GT 230341 || |||||| |||| ||| ||||| || |||||| | |||| | |||| | || Sbjct 24868624 TTCAAACGAGCTCATATCTCGAGACGAAGGCCTCCATTGCGATTTCG-CTTGCTTGTTGT 24868682 Query 230342 ATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAG 230401 |||| ||| | |||||||| |||| || || || | | || || | Sbjct 24868683 ATTCTCTGCTGAACAACAAGCTGAGCGAAGAGAGTGTGAAGGGGATTGTGAAGGATGCTG 24868742 Query 230402 TTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT-GGCATGAAC 230460 |||| | |||| |||||| |||| || ||| | || || || || | || ||||| Sbjct 24868743 TTGATATCGAACGGGAGTTTGTTTGCGATGCTCTGCCG-GTTGCTTTGGTCGGGATGAAT 24868801 Query 230461 GCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT 230520 | || || ||| | | || || |||||||| || |||||| | || | || | || Sbjct 24868802 GGGGATCTGATGAGTGAATATATTGAATTCGTGGCTGACCGCTTGTTGGGGGCTTTGGGG 24868861 Query 230521 TACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAA 230580 || || |||| || |||||| |||| | |||||| | |||||| | || Sbjct 24868862 ATTGAAAAGTTGTATGGAGCTTCGAACCCGTTTGATTGGATGGAGTTGATTTCGTTGCAG 24868921 Query 230581 GGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCTGGTGTGATG 230637 |||||||| ||||||||||| ||| | || | || || ||| |||| | | |||||| Sbjct 24868922 GGGAAGACGAACTTCTTCGAGAAGAGGGTAGGGGATTACCAGAAGGCGTCG-GTGATG 24868978 Score = 113 bits (124), Expect = 1e-19 Identities = 575/898 (64%), Gaps = 24/898 (3%) Strand=Plus/Minus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| |||||| ||| | || ||| || ||||| |||||||||||||| | ||| Sbjct 26603534 TCTGCATGTTCCCGATCAAGTACCCCTCGATCTGGGAGATGTACAAGAAGGCCGAGGCCT 26603475 Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAAC 229870 | ||||||||| | ||||| || ||| | | ||| || | ||||| | | | Sbjct 26603474 CGTTCTGGACCGCCGAGGAGGTCGATCTCAGCCAAGATATCCGCCACTGGGACCAAACCC 26603415 Query 229871 TCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATG 229930 | | | |||||| || || ||| ||| ||| |||| | || ||||| | |||||| | Sbjct 26603414 TAACCGCCGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACG 26603355 Query 229931 GTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGC 229988 | || || |||| || || || | || ||| || ||| || ||| | ||||| Sbjct 26603354 GCATCGTCCTGGAGAACCTCGCCGGCCG--TTTCATGAAGGAGGTCCAGGTCGCCGAGGC 26603297 Query 229989 ACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCT 230048 || || || | | ||| | || ||| ||||| || || || | ||| Sbjct 26603296 CAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAG--ATGTACTC- 26603240 Query 230049 GCTTATCGACGCG-CTTATTTCC--GACGAGCAAGAACGGAACGAGCTTTTTGATGCCAT 230105 |||| || || | || || ||| | ||| || | |||||| | ||||| Sbjct 26603239 GCTTCTCCTCGAATCCTACATCAAGGACTCCGATGAAAAGAGCCGCCTTTTTCACGCCAT 26603180 Query 230106 TGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGG 230165 || | |||||| || || ||||| ||||||| | ||| ||| | || ||| Sbjct 26603179 CGAGACCATCCCTTGCGTCGCCAAGAAGGCCGAGTGGGCGCTGAAGTGGATCGA---TGG 26603123 Query 230166 TAAA---TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTC 230222 | || || |||||| | | |||| | | || || ||||| ||| | || || Sbjct 26603122 CTCAGAGTCTTTCGCCGAGAGATTGATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTC 26603063 Query 230223 CGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCT 230282 |||||| || || ||||| || ||||| || || ||||||| || | | Sbjct 26603062 CGGGAGCTTTTGTGCCATTTTCTGGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTT 26603003 Query 230283 GTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTAT-GT 230341 || |||||| |||| ||| ||||| || |||||| | |||| | |||| | || Sbjct 26603002 TTCAAACGAGCTCATATCTCGAGACGAAGGCCTCCATTGCGATTTCG-CTTGCTTGTTGT 26602944 Query 230342 ATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAG 230401 |||| ||| | |||||||| |||| || || || | | || || | Sbjct 26602943 ATTCTCTGCTGAACAACAAGCTGAGCGAAGAGAGTGTGAAGGGGATTGTGAAGGATGCTG 26602884 Query 230402 TTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATT-GGCATGAAC 230460 |||| | |||| |||||| |||| || ||| | || || || || | || ||||| Sbjct 26602883 TTGATATCGAACGGGAGTTTGTTTGCGATGCTCTGCCG-GTTGCTTTGGTCGGGATGAAT 26602825 Query 230461 GCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT 230520 | || || ||| | | || || |||||||| || |||||| | || | || | || Sbjct 26602824 GGGGATCTGATGAGTGAATATATTGAATTCGTGGCTGACCGCTTGTTGGGGGCTTTGGGG 26602765 Query 230521 TACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAA 230580 || || |||| || |||||| |||| | |||||| | |||||| | || Sbjct 26602764 ATTGAAAAGTTGTATGGAGCTTCGAACCCGTTTGATTGGATGGAGTTGATTTCGTTGCAG 26602705 Query 230581 GGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCTGGTGTGATG 230637 |||||||| ||||||||||| ||| | || | || || ||| |||| | | |||||| Sbjct 26602704 GGGAAGACGAACTTCTTCGAGAAGAGGGTAGGGGATTACCAGAAGGCGTCG-GTGATG 26602648 >seq6 Length=78779235 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 ||||||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 75711817 CTTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 75711876 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 75711877 AGCCCCACGGTGGGC 75711891 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4790514 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4790455 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4790454 CCCACGGTGGGC 4790443 >seq8 Length=131339754 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 129377635 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 129377694 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 129377695 CCCACGGTGGGC 129377706 >seq7 Length=151357931 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18543859 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18543918 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18543919 CCCACGGTGGGC 18543930 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 54565703 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 54565762 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 54565763 CCCACGGTGGGC 54565774 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 118579583 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 118579524 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 118579523 CCCACGGTGGGC 118579512 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 141903826 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 141903885 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 141903886 CCCACGGTGGGC 141903897 >seq5 Length=131469567 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 108045123 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 108045064 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 108045063 CCCACGGTGGGC 108045052 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 108050250 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 108050191 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 108050190 CCCACGGTGGGC 108050179 >seq4 Length=146560859 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 41377879 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 41377938 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 41377939 CCCACGGTGGGC 41377950 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 63062401 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 63062342 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 63062341 CCCACGGTGGGC 63062330 >seq3 Length=113259003 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4263441 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4263500 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4263501 CCCACGGTGGGC 4263512 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 52586968 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 52586909 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 52586908 CCCACGGTGGGC 52586897 >seq1 Length=132393784 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1404639 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1404580 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1404579 CCCACGGTGGGC 1404568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057664178660960