Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 140 3e-28 >seq2 Length=84732013 Score = 140 bits (154), Expect = 3e-28 Identities = 295/437 (68%), Gaps = 5/437 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || |||||||||||||| | || ||||||| || || ||||| |||| Sbjct 24868682 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 24868623 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || ||||| |||||| ||| || || || | ||| || || || || ||| | Sbjct 24868622 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGG 24868563 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || || |||||| | ||||| ||||| |||| |||||| | | | ||| Sbjct 24868562 AGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAAGAC---TCTG 24868506 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 | | ||||| ||| || |||||||||| || | | |||| || || || | Sbjct 24868505 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 24868446 Query 17196 TGGCCTTAAATA-ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 |||| | ||| | ||| ||||| | ||| | || || | |||| ||| || Sbjct 24868445 TGGCGTGAAAAAGGCGGCTC-TTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGC 24868387 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| ||||| || ||||| ||| | ||| Sbjct 24868386 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCC 24868327 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || || | || || ||| ||| || | || || || || |||||||||||| Sbjct 24868326 TCGGCGACCTGGACCTCCTTCATGAAACGGCCGGCGAGGTTCTCCAGGACGATGCCGTCG 24868267 Query 17375 CTCGCGGCGAAAAACGC 17391 |||||||| || || Sbjct 24868266 GAGGCGGCGAAGAAGGC 24868250 Score = 140 bits (154), Expect = 3e-28 Identities = 295/437 (68%), Gaps = 5/437 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || |||||||||||||| | || ||||||| || || ||||| |||| Sbjct 26602944 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 26603003 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || ||||| |||||| ||| || || || | ||| || || || || ||| | Sbjct 26603004 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGG 26603063 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || || |||||| | ||||| ||||| |||| |||||| | | | ||| Sbjct 26603064 AGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAAGAC---TCTG 26603120 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 | | ||||| ||| || |||||||||| || | | |||| || || || | Sbjct 26603121 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 26603180 Query 17196 TGGCCTTAAATA-ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 |||| | ||| | ||| ||||| | ||| | || || | |||| ||| || Sbjct 26603181 TGGCGTGAAAAAGGCGGCTC-TTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGC 26603239 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| ||||| || ||||| ||| | ||| Sbjct 26603240 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCC 26603299 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || || | || || ||| ||| || | || || || || |||||||||||| Sbjct 26603300 TCGGCGACCTGGACCTCCTTCATGAAACGGCCGGCGAGGTTCTCCAGGACGATGCCGTCG 26603359 Query 17375 CTCGCGGCGAAAAACGC 17391 |||||||| || || Sbjct 26603360 GAGGCGGCGAAGAAGGC 26603376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517469313778560