Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 3e-28
>seq2
Length=84732013
Score = 140 bits (154), Expect = 3e-28
Identities = 295/437 (68%), Gaps = 5/437 (1%)
Strand=Plus/Minus
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||| || || |||||||||||||| | || ||||||| || || ||||| ||||
Sbjct 24868682 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 24868623
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| || ||||| |||||| ||| || || || | ||| || || || || ||| |
Sbjct 24868622 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGG 24868563
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135
| ||||| || || |||||| | ||||| ||||| |||| |||||| | | | |||
Sbjct 24868562 AGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAAGAC---TCTG 24868506
Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195
| | ||||| ||| || |||||||||| || | | |||| || || || |
Sbjct 24868505 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 24868446
Query 17196 TGGCCTTAAATA-ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254
|||| | ||| | ||| ||||| | ||| | || || | |||| ||| ||
Sbjct 24868445 TGGCGTGAAAAAGGCGGCTC-TTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGC 24868387
Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314
|||||| |||||||| |||||||| ||||| ||||| || ||||| ||| | |||
Sbjct 24868386 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCC 24868327
Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374
|| || | || || ||| ||| || | || || || || ||||||||||||
Sbjct 24868326 TCGGCGACCTGGACCTCCTTCATGAAACGGCCGGCGAGGTTCTCCAGGACGATGCCGTCG 24868267
Query 17375 CTCGCGGCGAAAAACGC 17391
|||||||| || ||
Sbjct 24868266 GAGGCGGCGAAGAAGGC 24868250
Score = 140 bits (154), Expect = 3e-28
Identities = 295/437 (68%), Gaps = 5/437 (1%)
Strand=Plus/Plus
Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015
||| || || |||||||||||||| | || ||||||| || || ||||| ||||
Sbjct 26602944 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 26603003
Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075
| || ||||| |||||| ||| || || || | ||| || || || || ||| |
Sbjct 26603004 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGG 26603063
Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135
| ||||| || || |||||| | ||||| ||||| |||| |||||| | | | |||
Sbjct 26603064 AGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAAGAC---TCTG 26603120
Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195
| | ||||| ||| || |||||||||| || | | |||| || || || |
Sbjct 26603121 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 26603180
Query 17196 TGGCCTTAAATA-ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254
|||| | ||| | ||| ||||| | ||| | || || | |||| ||| ||
Sbjct 26603181 TGGCGTGAAAAAGGCGGCTC-TTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGC 26603239
Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314
|||||| |||||||| |||||||| ||||| ||||| || ||||| ||| | |||
Sbjct 26603240 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCC 26603299
Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374
|| || | || || ||| ||| || | || || || || ||||||||||||
Sbjct 26603300 TCGGCGACCTGGACCTCCTTCATGAAACGGCCGGCGAGGTTCTCCAGGACGATGCCGTCG 26603359
Query 17375 CTCGCGGCGAAAAACGC 17391
|||||||| || ||
Sbjct 26603360 GAGGCGGCGAAGAAGGC 26603376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517469313778560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |