Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 >seq2 Length=84732013 Score = 100 bits (110), Expect = 3e-16 Identities = 273/412 (66%), Gaps = 7/412 (2%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||| |||||||| || |||||||||| || || ||||| ||||| |||||| Sbjct 24868674 CAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAAC 24868615 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| ||| || || || | |||||| || ||| ||| ||| || ||||| Sbjct 24868614 CCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAA 24868555 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 || || || || | ||||||||||| |||| || ||| | || ||| | Sbjct 24868554 ATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAA---AGACTCTGAGCCATCG 24868498 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||||| ||| | |||| ||||| || | | ||| || || || ||||| | | Sbjct 24868497 ATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGA 24868438 Query 16442 AACA-ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 || | ||| ||||| | || | || || | || | || | |||||| Sbjct 24868437 AAAAGGCGGCTC-TTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACAT 24868379 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTAT 16560 || ||||| |||||||| ||||| ||||| || || |||||| | ||||| || | Sbjct 24868378 CTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGAC 24868319 Query 16561 TTGTACTTCC-ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611 || || ||| | | ||| || | || |||||||| ||||| ||||| Sbjct 24868318 CTGGACCTCCTTCATGAAA-CGGCCGGCGAGGTTCTCCAGGACGATGCCGTC 24868268 Score = 100 bits (110), Expect = 3e-16 Identities = 273/412 (66%), Gaps = 7/412 (2%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||| |||||||| || |||||||||| || || ||||| ||||| |||||| Sbjct 26602952 CAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAAC 26603011 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| ||| || || || | |||||| || ||| ||| ||| || ||||| Sbjct 26603012 CCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAA 26603071 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 || || || || | ||||||||||| |||| || ||| | || ||| | Sbjct 26603072 ATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAA---AGACTCTGAGCCATCG 26603128 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||||| ||| | |||| ||||| || | | ||| || || || ||||| | | Sbjct 26603129 ATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGA 26603188 Query 16442 AACA-ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 || | ||| ||||| | || | || || | || | || | |||||| Sbjct 26603189 AAAAGGCGGCTC-TTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACAT 26603247 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTAT 16560 || ||||| |||||||| ||||| ||||| || || |||||| | ||||| || | Sbjct 26603248 CTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGAC 26603307 Query 16561 TTGTACTTCC-ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611 || || ||| | | ||| || | || |||||||| ||||| ||||| Sbjct 26603308 CTGGACCTCCTTCATGAAA-CGGCCGGCGAGGTTCTCCAGGACGATGCCGTC 26603358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511339017517440