Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq2 100 3e-16
>seq2
Length=84732013
Score = 100 bits (110), Expect = 3e-16
Identities = 273/412 (66%), Gaps = 7/412 (2%)
Strand=Plus/Minus
Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261
|| ||||| |||||||| || |||||||||| || || ||||| ||||| ||||||
Sbjct 24868674 CAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAAC 24868615
Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321
|| ||||| ||| || || || | |||||| || ||| ||| ||| || |||||
Sbjct 24868614 CCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAA 24868555
Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381
|| || || || | ||||||||||| |||| || ||| | || ||| |
Sbjct 24868554 ATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAA---AGACTCTGAGCCATCG 24868498
Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441
||||| ||| | |||| ||||| || | | ||| || || || ||||| | |
Sbjct 24868497 ATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGA 24868438
Query 16442 AACA-ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500
|| | ||| ||||| | || | || || | || | || | ||||||
Sbjct 24868437 AAAAGGCGGCTC-TTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACAT 24868379
Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTAT 16560
|| ||||| |||||||| ||||| ||||| || || |||||| | ||||| || |
Sbjct 24868378 CTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGAC 24868319
Query 16561 TTGTACTTCC-ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611
|| || ||| | | ||| || | || |||||||| ||||| |||||
Sbjct 24868318 CTGGACCTCCTTCATGAAA-CGGCCGGCGAGGTTCTCCAGGACGATGCCGTC 24868268
Score = 100 bits (110), Expect = 3e-16
Identities = 273/412 (66%), Gaps = 7/412 (2%)
Strand=Plus/Plus
Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261
|| ||||| |||||||| || |||||||||| || || ||||| ||||| ||||||
Sbjct 26602952 CAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAAC 26603011
Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321
|| ||||| ||| || || || | |||||| || ||| ||| ||| || |||||
Sbjct 26603012 CCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAA 26603071
Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381
|| || || || | ||||||||||| |||| || ||| | || ||| |
Sbjct 26603072 ATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAA---AGACTCTGAGCCATCG 26603128
Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441
||||| ||| | |||| ||||| || | | ||| || || || ||||| | |
Sbjct 26603129 ATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGA 26603188
Query 16442 AACA-ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500
|| | ||| ||||| | || | || || | || | || | ||||||
Sbjct 26603189 AAAAGGCGGCTC-TTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACAT 26603247
Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTAT 16560
|| ||||| |||||||| ||||| ||||| || || |||||| | ||||| || |
Sbjct 26603248 CTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGAC 26603307
Query 16561 TTGTACTTCC-ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611
|| || ||| | | ||| || | || |||||||| ||||| |||||
Sbjct 26603308 CTGGACCTCCTTCATGAAA-CGGCCGGCGAGGTTCTCCAGGACGATGCCGTC 26603358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511339017517440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |