Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 2e-26
seq4 131 2e-25
seq3174 104 3e-17
seq831 104 3e-17
seq10 104 3e-17
>seq2
Length=84732013
Score = 134 bits (148), Expect = 2e-26
Identities = 258/376 (69%), Gaps = 6/376 (2%)
Strand=Plus/Minus
Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186
||| ||| || ||||||||||| || || || ||||||| | || | ||||| ||||
Sbjct 24868682 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 24868623
Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245
| || | || ||||| | || |||||||||||||| || |||| | |||| | | ||
Sbjct 24868622 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGG-CACAAAAGCTCCCG 24868564
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT- 24304
|| |||||||| ||||| || ||||| || || | ||| || | || | | ||
Sbjct 24868563 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTG 24868506
Query 24305 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363
| ||| |||||||| | ||||| ||||||||||| || ||||| || ||||| |
Sbjct 24868505 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 24868446
Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423
| || | ||| || | | ||||||| || || | || | || | | |||
Sbjct 24868445 TGGCGTGAAAAAGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCG 24868386
Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483
||||| || || || ||||| || ||||| || || || |||||||| || ||||
Sbjct 24868385 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCT 24868326
Query 24484 CGGTAATCTGTACTTC 24499
||| | ||| || ||
Sbjct 24868325 CGGCGACCTGGACCTC 24868310
Score = 134 bits (148), Expect = 2e-26
Identities = 258/376 (69%), Gaps = 6/376 (2%)
Strand=Plus/Plus
Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186
||| ||| || ||||||||||| || || || ||||||| | || | ||||| ||||
Sbjct 26602944 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 26603003
Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245
| || | || ||||| | || |||||||||||||| || |||| | |||| | | ||
Sbjct 26603004 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGG-CACAAAAGCTCCCG 26603062
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT- 24304
|| |||||||| ||||| || ||||| || || | ||| || | || | | ||
Sbjct 26603063 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTG 26603120
Query 24305 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363
| ||| |||||||| | ||||| ||||||||||| || ||||| || ||||| |
Sbjct 26603121 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 26603180
Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423
| || | ||| || | | ||||||| || || | || | || | | |||
Sbjct 26603181 TGGCGTGAAAAAGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCG 26603240
Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483
||||| || || || ||||| || ||||| || || || |||||||| || ||||
Sbjct 26603241 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCT 26603300
Query 24484 CGGTAATCTGTACTTC 24499
||| | ||| || ||
Sbjct 26603301 CGGCGACCTGGACCTC 26603316
>seq4
Length=146560859
Score = 131 bits (144), Expect = 2e-25
Identities = 172/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 54417 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 54476
||||| ||| || ||||||||||||||||||||||| || |||||||| | || |
Sbjct 9258805 GACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACA 9258746
Query 54477 GTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACA 54535
||||| ||| || | || ||| || || ||||| | ||| |||||||| || || ||
Sbjct 9258745 TTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACT 9258687
Query 54536 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGAT 54595
| ||| | |||||| ||||||||||| || | ||| | | ||| | | ||||||
Sbjct 9258686 CTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATAGGAT 9258627
Query 54596 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
| || | |||||| |||||||| |||| || |||||||| || ||||| ||
Sbjct 9258626 CTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571
Score = 82.4 bits (90), Expect = 9e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983
||||| || ||| ||| ||||| | |||||| || ||||| || |||||||
Sbjct 9260036 TCTCTCTCATATTTTGTGTACAACTTATTAAACTCCTCGCCCCAGCAATCAGCCAATCCC 9259977
Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043
||| ||||| || || | ||| ||||||||||| | || | |||| | |||||||
Sbjct 9259976 GGAGCTTCATTAGGGCAAAACAATGACCACTCTCCATTATTTTGGACTCTCTCCATAAAG 9259917
Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093
|| || |||||||| || || ||| ||||| | | ||| ||||| ||
Sbjct 9259916 AGGTCGGGAATCCAGAGGGCATAAAAGAGATCGCGTGCTCTGTGTTCTTC 9259867
>seq3174
Length=2385
Score = 104 bits (114), Expect = 3e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472
||| ||||| ||| || |||||||||||||||||||||| || |||||||| |
Sbjct 1318 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1377
Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 54531
|| | ||||| ||| || | || ||| || || ||||| | ||| |||||||| || ||
Sbjct 1378 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1436
Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 54567
|| | ||| | |||||| ||||||||||| || ||
Sbjct 1437 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1472
>seq831
Length=51122
Score = 104 bits (114), Expect = 3e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472
||| ||||| ||| || |||||||||||||||||||||| || |||||||| |
Sbjct 19017 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 19076
Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 54531
|| | ||||| ||| || | || ||| || || ||||| | ||| |||||||| || ||
Sbjct 19077 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 19135
Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 54567
|| | ||| | |||||| ||||||||||| || ||
Sbjct 19136 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 19171
>seq10
Length=73452336
Score = 104 bits (114), Expect = 3e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472
||| ||||| ||| || |||||||||||||||||||||| || |||||||| |
Sbjct 1168067 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1168008
Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 54531
|| | ||||| ||| || | || ||| || || ||||| | ||| |||||||| || ||
Sbjct 1168007 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1167949
Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 54567
|| | ||| | |||||| ||||||||||| || ||
Sbjct 1167948 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1167913
Score = 104 bits (114), Expect = 3e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472
||| ||||| ||| || |||||||||||||||||||||| || |||||||| |
Sbjct 24507686 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 24507745
Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 54531
|| | ||||| ||| || | || ||| || || ||||| | ||| |||||||| || ||
Sbjct 24507746 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 24507804
Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 54567
|| | ||| | |||||| ||||||||||| || ||
Sbjct 24507805 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 24507840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593634085436160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |