Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 seq4 131 2e-25 seq3174 104 3e-17 seq831 104 3e-17 seq10 104 3e-17 >seq2 Length=84732013 Score = 134 bits (148), Expect = 2e-26 Identities = 258/376 (69%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || ||||||||||| || || || ||||||| | || | ||||| |||| Sbjct 24868682 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 24868623 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 | || | || ||||| | || |||||||||||||| || |||| | |||| | | || Sbjct 24868622 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGG-CACAAAAGCTCCCG 24868564 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT- 24304 || |||||||| ||||| || ||||| || || | ||| || | || | | || Sbjct 24868563 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTG 24868506 Query 24305 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 | ||| |||||||| | ||||| ||||||||||| || ||||| || ||||| | Sbjct 24868505 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 24868446 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | || | ||| || | | ||||||| || || | || | || | | ||| Sbjct 24868445 TGGCGTGAAAAAGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCG 24868386 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 ||||| || || || ||||| || ||||| || || || |||||||| || |||| Sbjct 24868385 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCT 24868326 Query 24484 CGGTAATCTGTACTTC 24499 ||| | ||| || || Sbjct 24868325 CGGCGACCTGGACCTC 24868310 Score = 134 bits (148), Expect = 2e-26 Identities = 258/376 (69%), Gaps = 6/376 (2%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || ||||||||||| || || || ||||||| | || | ||||| |||| Sbjct 26602944 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 26603003 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 | || | || ||||| | || |||||||||||||| || |||| | |||| | | || Sbjct 26603004 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGG-CACAAAAGCTCCCG 26603062 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT- 24304 || |||||||| ||||| || ||||| || || | ||| || | || | | || Sbjct 26603063 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTG 26603120 Query 24305 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 | ||| |||||||| | ||||| ||||||||||| || ||||| || ||||| | Sbjct 26603121 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 26603180 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | || | ||| || | | ||||||| || || | || | || | | ||| Sbjct 26603181 TGGCGTGAAAAAGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCG 26603240 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 ||||| || || || ||||| || ||||| || || || |||||||| || |||| Sbjct 26603241 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCT 26603300 Query 24484 CGGTAATCTGTACTTC 24499 ||| | ||| || || Sbjct 26603301 CGGCGACCTGGACCTC 26603316 >seq4 Length=146560859 Score = 131 bits (144), Expect = 2e-25 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 54417 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 54476 ||||| ||| || ||||||||||||||||||||||| || |||||||| | || | Sbjct 9258805 GACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACA 9258746 Query 54477 GTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACA 54535 ||||| ||| || | || ||| || || ||||| | ||| |||||||| || || || Sbjct 9258745 TTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACT 9258687 Query 54536 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGAT 54595 | ||| | |||||| ||||||||||| || | ||| | | ||| | | |||||| Sbjct 9258686 CTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATAGGAT 9258627 Query 54596 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 | || | |||||| |||||||| |||| || |||||||| || ||||| || Sbjct 9258626 CTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 ||||| || ||| ||| ||||| | |||||| || ||||| || ||||||| Sbjct 9260036 TCTCTCTCATATTTTGTGTACAACTTATTAAACTCCTCGCCCCAGCAATCAGCCAATCCC 9259977 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 ||| ||||| || || | ||| ||||||||||| | || | |||| | ||||||| Sbjct 9259976 GGAGCTTCATTAGGGCAAAACAATGACCACTCTCCATTATTTTGGACTCTCTCCATAAAG 9259917 Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 || || |||||||| || || ||| ||||| | | ||| ||||| || Sbjct 9259916 AGGTCGGGAATCCAGAGGGCATAAAAGAGATCGCGTGCTCTGTGTTCTTC 9259867 >seq3174 Length=2385 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 1318 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1377 Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 54531 || | ||||| ||| || | || ||| || || ||||| | ||| |||||||| || || Sbjct 1378 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1436 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 54567 || | ||| | |||||| ||||||||||| || || Sbjct 1437 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1472 >seq831 Length=51122 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 19017 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 19076 Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 54531 || | ||||| ||| || | || ||| || || ||||| | ||| |||||||| || || Sbjct 19077 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 19135 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 54567 || | ||| | |||||| ||||||||||| || || Sbjct 19136 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 19171 >seq10 Length=73452336 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 1168067 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1168008 Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 54531 || | ||||| ||| || | || ||| || || ||||| | ||| |||||||| || || Sbjct 1168007 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1167949 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 54567 || | ||| | |||||| ||||||||||| || || Sbjct 1167948 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1167913 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 24507686 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 24507745 Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 54531 || | ||||| ||| || | || ||| || || ||||| | ||| |||||||| || || Sbjct 24507746 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 24507804 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 54567 || | ||| | |||||| ||||||||||| || || Sbjct 24507805 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 24507840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593634085436160