Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq3 107 2e-18 seq8 104 3e-17 seq7 86.0 7e-12 seq1 86.0 7e-12 >seq6 Length=78779235 Score = 107 bits (118), Expect = 2e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || ||||||||||||||||||||||| |||| || || || || |||||||| Sbjct 3703500 TCCTTCTGGATATTGTAATCAGCCAGAGTCCGGCCGTCCTCGAGTTGTTTTCCAGCGAAG 3703441 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | |||||||| | || | || ||||||||| ||| || |||| | Sbjct 3703440 ATAAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTA 3703381 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | || || |||| || || || | ||||||||||| || ||||| ||||| Sbjct 3703380 TCAATAGTATCGGAGCTC---TCGACCTCCAGAGTGATGGTTTTTCCGGTTAGGGTCTTG 3703324 Query 43170 ACAAAGATTTGCAT 43183 ||||| |||||||| Sbjct 3703323 ACAAAAATTTGCAT 3703310 Score = 104 bits (114), Expect = 3e-17 Identities = 156/218 (72%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 || |||||| || | || |||||| ||||| ||||||||||| |||||||| | || Sbjct 3703750 CAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCGGCCATC 3703691 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || || ||||| || || ||||| | ||||||||| | || | || ||||||||| Sbjct 3703690 CTCGAGTTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 3703631 Query 43091 CATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGA 43146 ||| || |||| ||| | | | ||||| |||| || || || | ||||| Sbjct 3703630 TTGGATCTTCGCCTTGA-CGTTGTCGATGGTGTCAGAGCTC---TCGACCTCCAACGTGA 3703575 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| ||||| || || || || || || || |||||| Sbjct 3703574 TGGTCTTGCCGGTCAGGGTTTTGACGAAAATCTGCATT 3703537 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||||||||||||||| ||||||| | | || || |||||||| || ||||| Sbjct 3703957 CTCCTTCTGAATATTGTAATCAGCAAGAGTCCTCCCATCTTCAAGCTGCTTCCCTGCGAA 3703898 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | |||||| || | ||| | | |||||| ||| || || |||| ||| Sbjct 3703897 GATCAACCTCTGCTGATCCGGCGGAATCCCCTCCTTATCCTGTATCTTCGCCTTGA-CGT 3703839 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| |||| ||||| || | ||||| || || ||||| | |||| Sbjct 3703838 TGTCGATCGTGTCAGAGCTC---TCCACCTCCAAGGTGATCGTCTTCCCCGTCAAGGTCT 3703782 Query 43168 TTACAAAGATTTGCAT 43183 | ||||| || ||||| Sbjct 3703781 TGACAAATATCTGCAT 3703766 >seq3 Length=113259003 Score = 107 bits (118), Expect = 2e-18 Identities = 145/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 42986 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 43045 |||| ||||||||| |||||||||||||| || || || |||| || ||||| || || Sbjct 21886203 TGTGGACTCCTTTTGGATATTGTAATCAGCGAGGGTACGGCCGTCCTCAAGCTGTTTGCC 21886262 Query 43046 AGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 43105 || || || |||| |||||||| | || | | |||||||||| |||||| ||| Sbjct 21886263 GGCAAAGATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTTGTCCTGGATTTTGGCTTT 21886322 Query 43106 GAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 || | | | ||||| ||| || || |||| |||||||| ||||| || || Sbjct 21886323 GACATTATCAATGGTGTCAGAACTC---TCGACCTCGAGAGTGATGGTCTTGCCTGTGAG 21886379 Query 43163 CGTCTTTACAAAGATTTGCAT 43183 || || |||||||| ||||| Sbjct 21886380 GGTTTTCACAAAGATCTGCAT 21886400 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTAC 60131 || ||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||| Sbjct 13916745 GCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGAAATACTCACCACTATACTAC 13916803 >seq8 Length=131339754 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || |||||||| || || || || |||| || |||||||| || || || Sbjct 3136030 CTCCTTTTGGATGTTGTAATCTGCTAGGGTGCGGCCGTCCTCAAGCTGCTTCCCCGCAAA 3136089 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | | ||| |||||| ||| |||| | ||||| Sbjct 3136090 AATGAGCCTCTGCTGGTCTGGGGGGATACCCTCTTTGTCC-TGAATTTTGGCTTTGACAT 3136148 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | |||||||||||||| || || |||| Sbjct 3136149 TGTCGATTGTGTCAGAGCTC---TCGACCTCAAGGGTGATGGTTTTGCCAGTCAGTGTCT 3136205 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||| ||||| Sbjct 3136206 TAACGAAGATCTGCAT 3136221 Score = 102 bits (112), Expect = 9e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||| | ||| | ||| ||||||||| || ||||| || || ||||| || | || || Sbjct 3136240 CACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCATCCTC 3136299 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || || || | ||||||||| | || | || |||||||||| Sbjct 3136300 AAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 3136359 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 |||||| |||| | | | ||||| |||| || || || | ||||||||| Sbjct 3136360 GATTTTGGCCTTGACATTGTCGATTGTGTCAGAGCTC---TCAACCTCAAGCGTGATGGT 3136416 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || | ||||| ||||| || ||||| Sbjct 3136417 TTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 3136449 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||||| ||| | || | ||| | || ||||||||| || || || ||||| Sbjct 3136451 CCACCTCTTAGACGAAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTATAGTCAGCA 3136510 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| ||||| || ||||| | ||||||||| | || Sbjct 3136511 AGGGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGGTCCGGGGGG 3136570 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTCC 43133 | || |||||||||| |||||| |||| | | | |||||| ||| || Sbjct 3136571 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATTGTGTCGGAGCTC---TCG 3136627 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||||||||| || || | ||||| ||||| || ||||| Sbjct 3136628 ACCTCAAGGGTGATGGTTTTTCCTGTCAAGGTCTTGACAAAAATCTGCAT 3136677 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 122668994 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTTCCCGCGAA 122669053 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | ||||||||| ||| || |||| | Sbjct 122669054 AATGAGGCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 122669113 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || |||| |||||||| ||||| || || || || || Sbjct 122669114 GTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTGAC 122669173 Query 43172 AAAGATTTGCATTTT 43186 ||||| ||||| || Sbjct 122669174 GAAGATCTGCATGTT 122669188 >seq7 Length=151357931 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 60035 TAACAACAAATTAACGTTTATGAAAAATTTTCTCCTCG--GCAGGGAATCGAACCCTGGT 60092 |||||||||| || ||| | ||||| | || || || ||| ||||||||| ||| Sbjct 151195300 TAACAACAAAAAAATGTTCACGAAAATCGTAATCGCCGTTGCCGGGGATCGAACCCGGGT 151195359 Query 60093 CTCCCGCGTGACAGGCGGACATACTCACCACTATACTAC 60131 | |||||||||||||||| ||||||||||||||||||| Sbjct 151195360 CACCCGCGTGACAGGCGGGAATACTCACCACTATACTAC 151195398 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60051 TTTATGAAAA--ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGC 60108 |||| |||| |||||| || || ||| ||||||||| |||| |||||||||||||| Sbjct 865226 TTTAAAAAAACCATTTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGC 865285 Query 60109 GGACATACTCACCACTATACTAC 60131 || ||||||||||||||||||| Sbjct 865286 GGGAATACTCACCACTATACTAC 865308 >seq1 Length=132393784 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| ||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 1095811 AAAAATATTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 1095752 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 1095751 TCACCACTATACTAC 1095737 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | || || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 2015033 AAAAAATATCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 2014974 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 2014973 TCACCACTATACTAC 2014959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571733314085760