Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 7e-11 >seq2 Length=84732013 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||||| ||||| ||||| | |||||||| | | ||| | |||||||||||| || | Sbjct 24868674 CAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAAC 24868615 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| | ||| || ||||||| ||| || || || ||| || || ||||| Sbjct 24868614 CCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAA 24868555 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTC 16389 || ||||| || ||||| || | ||||| ||| Sbjct 24868554 ATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTC 24868520 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||||| ||||| ||||| | |||||||| | | ||| | |||||||||||| || | Sbjct 26602952 CAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAAC 26603011 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| | ||| || ||||||| ||| || || || ||| || || ||||| Sbjct 26603012 CCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAGAAA 26603071 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTC 16389 || ||||| || ||||| || | ||||| ||| Sbjct 26603072 ATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTC 26603106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462443825731200