Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 3e-14 seq8 87.8 1e-12 seq6 84.2 2e-11 seq5 84.2 2e-11 >seq3 Length=113259003 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| || |||| || | || | ||| || ||| ||||||||| ||||| ||||| Sbjct 21885489 GCCTCCCCTCAGCCTCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGC 21885548 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || || || || ||||| || ||||||| ||| ||||| || || Sbjct 21885549 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGG 21885608 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || ||| || || | | | |||| | |||||| Sbjct 21885609 GATTCCCTCCTTGTCCTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGCTCTCCAC 21885668 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || || |||||||| || || ||||| ||||| || |||||| Sbjct 21885669 TTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCATG 21885717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| || |||| || | ||||| || || || ||||||||| ||||||||||| Sbjct 21885717 GCCTCCCCTCAGCCTGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 21885776 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || |||| || || || || || |||| || ||| ||||| || || Sbjct 21885777 AAGGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGG 21885836 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| ||| || || || | | | |||| | |||||| Sbjct 21885837 GATGCCCTCCTTGTCCTGAATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCAC 21885896 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | ||| || |||||||| || || ||||| ||||| || |||||| Sbjct 21885897 TTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 21885945 >seq8 Length=131339754 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| |||||| || ||||||||||| || ||| | || || | Sbjct 3135558 CAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCTAGAGTGCGGCCATCCTCGA 3135617 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || ||||| ||||| || | || ||| ||||| || || | || ||||||||| | Sbjct 3135618 GCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGA 3135677 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || |||||| | | | | ||| | ||||||||| | || || ||||| | Sbjct 3135678 TCTTGGCCTTAACATTGTCAATGGTATCCGAGCTCTCCACCTCAAGAGTGATGGTCTTCC 3135737 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||||||||| || || ||||| Sbjct 3135738 CCGTAAGAGTCTTCACGAAAATCTGCAT 3135765 >seq6 Length=78779235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||| || || || | || || Sbjct 3703746 ACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCGGCCATCCTCG 3703687 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| ||||| || || | || ||| ||||| || || | ||||||||||| Sbjct 3703686 AGTTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 3703627 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| || || |||||| Sbjct 3703626 ATCTTCGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCCAACGTGATGGTCTTG 3703567 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || || || || ||||| Sbjct 3703566 CCGGTCAGGGTTTTGACGAAAATCTGCAT 3703538 >seq5 Length=131469567 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/106 (78%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||| || || |||| | || |||||||||||||| || || Sbjct 128086065 CTCCTTCTGAATGTTGTAATCAGCAAGGGTGCGACCATCTTCCAGTTGTTTTCCAGCAAA 128086006 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC-GCAAT 45249 ||||||| ||| || || ||||| | |||||||| ||| ||||| Sbjct 128086005 AATCAACCTCTGCTGATCAGGAGGTATCCCCTCCTTATCCTGCAAT 128085960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395018421767632