Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq3 93.3 3e-14
seq8 87.8 1e-12
seq6 84.2 2e-11
seq5 84.2 2e-11
>seq3
Length=113259003
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
||| || |||| || | || | ||| || ||| ||||||||| ||||| |||||
Sbjct 21885489 GCCTCCCCTCAGCCTCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGC 21885548
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| | || || || || || ||||| || ||||||| ||| ||||| || ||
Sbjct 21885549 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGG 21885608
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||||||||||| || ||| || || | | | |||| | ||||||
Sbjct 21885609 GATTCCCTCCTTGTCCTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGCTCTCCAC 21885668
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|||| || || |||||||| || || ||||| ||||| || ||||||
Sbjct 21885669 TTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCATG 21885717
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
||| || |||| || | ||||| || || || ||||||||| |||||||||||
Sbjct 21885717 GCCTCCCCTCAGCCTGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 21885776
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| || | || |||| || || || || || |||| || ||| ||||| || ||
Sbjct 21885777 AAGGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGG 21885836
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||||||||||| ||| || || || | | | |||| | ||||||
Sbjct 21885837 GATGCCCTCCTTGTCCTGAATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCAC 21885896
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| | ||| || |||||||| || || ||||| ||||| || ||||||
Sbjct 21885897 TTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 21885945
>seq8
Length=131339754
Score = 87.8 bits (96), Expect = 1e-12
Identities = 145/208 (70%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || || ||| |||||| || ||||||||||| || ||| | || || |
Sbjct 3135558 CAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCTAGAGTGCGGCCATCCTCGA 3135617
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || ||||| ||||| || | || ||| ||||| || || | || ||||||||| |
Sbjct 3135618 GCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGA 3135677
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || |||||| | | | | ||| | ||||||||| | || || ||||| |
Sbjct 3135678 TCTTGGCCTTAACATTGTCAATGGTATCCGAGCTCTCCACCTCAAGAGTGATGGTCTTCC 3135737
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||||||||||| || || |||||
Sbjct 3135738 CCGTAAGAGTCTTCACGAAAATCTGCAT 3135765
>seq6
Length=78779235
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||||||||||||| || || || | || ||
Sbjct 3703746 ACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCGGCCATCCTCG 3703687
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|||||||| ||||| || || | || ||| ||||| || || | |||||||||||
Sbjct 3703686 AGTTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 3703627
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||| ||||||| || || ||||||
Sbjct 3703626 ATCTTCGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACCTCCAACGTGATGGTCTTG 3703567
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| || || || || || |||||
Sbjct 3703566 CCGGTCAGGGTTTTGACGAAAATCTGCAT 3703538
>seq5
Length=131469567
Score = 84.2 bits (92), Expect = 2e-11
Identities = 83/106 (78%), Gaps = 1/106 (1%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||||||||||||||| || || |||| | || |||||||||||||| || ||
Sbjct 128086065 CTCCTTCTGAATGTTGTAATCAGCAAGGGTGCGACCATCTTCCAGTTGTTTTCCAGCAAA 128086006
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC-GCAAT 45249
||||||| ||| || || ||||| | |||||||| ||| |||||
Sbjct 128086005 AATCAACCTCTGCTGATCAGGAGGTATCCCCTCCTTATCCTGCAAT 128085960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395018421767632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |