Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq8 89.7 4e-13 seq6 82.4 6e-11 >seq8 Length=131339754 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || || || | || || || || || ||||| |||||||||||||| Sbjct 3136223 CCTCCACGGAGCCTTAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCG 3136282 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | || || || ||| | ||||| || || || || ||| Sbjct 3136283 AGAGTACGACCATCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGA 3136342 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || |||| |||||| | | | |||||| | ||| Sbjct 3136343 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATTGTGTCAGAGCTCTCAACC 3136402 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| ||||||||||||| || || |||||||| ||||| Sbjct 3136403 TCAAGCGTGATGGTTTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 3136449 >seq6 Length=78779235 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || || |||| ||| || || || || || ||||||||||| || || Sbjct 3703764 CCTCCACGAAGCCTCAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGCG 3703705 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | |||||| || ||| |||| || || || || || ||| Sbjct 3703704 AGAGTCCGGCCATCCTCGAGTTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 3703645 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || || | |||||| | | | |||||| | |||| Sbjct 3703644 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGACC 3703585 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| | |||||||||| ||||| || ||||| |||||| Sbjct 3703584 TCCAACGTGATGGTCTTGCCGGTCAGGGTTTTGACGAAAATCTGCATT 3703537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379289482577040