Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 174 1e-38 seq6 116 3e-21 seq8 93.3 4e-14 seq3 82.4 7e-11 >seq2 Length=84732013 Score = 174 bits (192), Expect = 1e-38 Identities = 495/752 (66%), Gaps = 14/752 (2%) Strand=Plus/Plus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||| ||||| | || || || ||| | |||||||| ||||| || || ||||| Sbjct 24868096 CATGTTCCCGATCAAGTACCCCTCGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTT 24868155 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATT---CCCTCAA 57661 ||||||| ||| || || || || | ||| | || | ||||| |||| | Sbjct 24868156 CTGGACCGCCGAGGAGGTCGATCTCAGCCAAGATATCCGCCACTGGGACCAAACCCTAAC 24868215 Query 57662 AGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721 | ||| | | || | | ||||| | || || |||||||| ||||| || || Sbjct 24868216 CGCCGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCAT 24868275 Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGA 57779 || ||||| | | || | ||||| | || || || || | ||||| || Sbjct 24868276 CGTCCTGGAGAACCTCGCCGGCCG--TTTCATGAAGGAGGTCCAGGTCGCCGAGGCCAGG 24868333 Query 57780 TGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTC 57839 ||| ||||| || || | ||||| || ||| | || || || ||||| ||||| ||| Sbjct 24868334 GCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTTCTC 24868393 Query 57840 ATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACA 57899 |||| | ||| | |||||| ||| || || | | || || |||| ||||| || Sbjct 24868394 CTCGAATCCTACATCAAGGACTCCGATGAAAAGAGCCGCCTTTTTCACGCCATCGAGACC 24868453 Query 57900 ATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGC 57958 || || ||| ||||||||||||| |||||| | | || ||||| | || | | | Sbjct 24868454 ATCCCTTGCG-TCGCCAAGAAGGCCGAGTGGGCGCTGAAGTGGATCGATGGCTCAGAGTC 24868512 Query 57959 CACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAG 58018 ||||||||||| | ||||| || || ||||||||| || ||||| || || || Sbjct 24868513 T---TTCGCCGAGAGATTGATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAG 24868569 Query 58019 CTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAA 58078 |||| || || || ||| | || || ||||| ||||||| || | || ||| || Sbjct 24868570 CTTTTGTGCCATTTTCTGGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAA 24868629 Query 58079 CGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCA 58138 |||| | ||||| || ||||| || |||||| ||||| || ||| | |||| |||| Sbjct 24868630 CGAGCTCATATCTCGAGACGAAGGCCTCCATTGCGATTTCGCTTGCTTGTTGTATTCTCT 24868689 Query 58139 CATTGTCAATAAACCGACGCG-GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGA 58197 | ||| || | || ||| || | | || ||| | | || || || | | Sbjct 24868690 GCTGAACAACAAGCTGA-GCGAAGAGAGTGTGAAGGGGATTGTGAAGGATGCTGTTGATA 24868748 Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257 ||||| |||||||| ||| || || ||||| || || |||| ||||| ||| Sbjct 24868749 TCGAACGGGAGTTTGTTTGCGATGCTCTGCCGGTTGCTTTGGTCGGGATGAATGGGGATC 24868808 Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGAC 58289 ||||| | || ||||| || || || ||| Sbjct 24868809 TGATGAGTGAATATATTGAATTCGTGGCTGAC 24868840 Score = 174 bits (192), Expect = 1e-38 Identities = 495/752 (66%), Gaps = 14/752 (2%) Strand=Plus/Minus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||| ||||| | || || || ||| | |||||||| ||||| || || ||||| Sbjct 26603530 CATGTTCCCGATCAAGTACCCCTCGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTT 26603471 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATT---CCCTCAA 57661 ||||||| ||| || || || || | ||| | || | ||||| |||| | Sbjct 26603470 CTGGACCGCCGAGGAGGTCGATCTCAGCCAAGATATCCGCCACTGGGACCAAACCCTAAC 26603411 Query 57662 AGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721 | ||| | | || | | ||||| | || || |||||||| ||||| || || Sbjct 26603410 CGCCGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCAT 26603351 Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGA 57779 || ||||| | | || | ||||| | || || || || | ||||| || Sbjct 26603350 CGTCCTGGAGAACCTCGCCGGCCG--TTTCATGAAGGAGGTCCAGGTCGCCGAGGCCAGG 26603293 Query 57780 TGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTC 57839 ||| ||||| || || | ||||| || ||| | || || || ||||| ||||| ||| Sbjct 26603292 GCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTTCTC 26603233 Query 57840 ATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACA 57899 |||| | ||| | |||||| ||| || || | | || || |||| ||||| || Sbjct 26603232 CTCGAATCCTACATCAAGGACTCCGATGAAAAGAGCCGCCTTTTTCACGCCATCGAGACC 26603173 Query 57900 ATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGC 57958 || || ||| ||||||||||||| |||||| | | || ||||| | || | | | Sbjct 26603172 ATCCCTTGCG-TCGCCAAGAAGGCCGAGTGGGCGCTGAAGTGGATCGATGGCTCAGAGTC 26603114 Query 57959 CACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAG 58018 ||||||||||| | ||||| || || ||||||||| || ||||| || || || Sbjct 26603113 T---TTCGCCGAGAGATTGATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAG 26603057 Query 58019 CTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAA 58078 |||| || || || ||| | || || ||||| ||||||| || | || ||| || Sbjct 26603056 CTTTTGTGCCATTTTCTGGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAA 26602997 Query 58079 CGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCA 58138 |||| | ||||| || ||||| || |||||| ||||| || ||| | |||| |||| Sbjct 26602996 CGAGCTCATATCTCGAGACGAAGGCCTCCATTGCGATTTCGCTTGCTTGTTGTATTCTCT 26602937 Query 58139 CATTGTCAATAAACCGACGCG-GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGA 58197 | ||| || | || ||| || | | || ||| | | || || || | | Sbjct 26602936 GCTGAACAACAAGCTGA-GCGAAGAGAGTGTGAAGGGGATTGTGAAGGATGCTGTTGATA 26602878 Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257 ||||| |||||||| ||| || || ||||| || || |||| ||||| ||| Sbjct 26602877 TCGAACGGGAGTTTGTTTGCGATGCTCTGCCGGTTGCTTTGGTCGGGATGAATGGGGATC 26602818 Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGAC 58289 ||||| | || ||||| || || || ||| Sbjct 26602817 TGATGAGTGAATATATTGAATTCGTGGCTGAC 26602786 >seq6 Length=78779235 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || ||||| || ||||| |||| |||||| | || Sbjct 3702854 ATGCAGATCTTTGTGAAAACACTAACCGGCAAGACAATCACACTCGAGGTTGAATCCTCT 3702913 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || ||| || ||| | |||||||||||| | || |||||||| Sbjct 3702914 GACACCATCGACAATGTTAAAGCAAAGA-TCCAGGACAAGGAAGGGATCCCTCCCGACCA 3702972 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||||| || ||||||||||||||| | || || ||| | ||||| || Sbjct 3702973 GCAACGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCGGATTACAA 3703032 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| ||||| || || || || ||||| || ||| | || ||||| || Sbjct 3703033 CATCCAAAAGGAGTCTACCCTCCATCTTGTCCTTCGTCTCAGGGGTGG 3703080 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || ||||| || || || ||||| ||||| | || || || || Sbjct 3703309 CATGCAAATTTTTGTCAAGACCCTAACCGGAAAAACCATCACTCTGGAGGTCGAGAGCTC 3703368 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | | || | ||||| | || |||||||| ||| | || || ||||| Sbjct 3703369 CGATACTATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCA 3703428 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || |||||||| ||||| | || ||| |||| || ||||| || Sbjct 3703429 GCAAAGGCTTATCTTCGCTGGAAAACAACTCGAGGACGGCCGGACTCTGGCTGATTACAA 3703488 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || ||||| ||||||||||| || || || ||| | || || Sbjct 3703489 TATCCAGAAGGAATCCACTCTTCATCTTGTCCTCAGGCTGCGTGGAGG 3703536 >seq8 Length=131339754 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||||||| ||||| || ||| | || || || || Sbjct 3135993 ATGCAAATTTTCGTTAAGACCCTGACAGGAAAAACCATTACCTTGGAGGTGGAGAGCTCG 3135934 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | ||| ||| ||||| ||| | || || || ||| Sbjct 3135933 GATACAATCGACAATGTCAAGGCCAAGATACAGGATAAGGAGGGCATCCCCCCGGATCAG 3135874 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || |||||||| || ||| | || ||| || | ||||| ||| Sbjct 3135873 CAGAGGCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGCCGAACCCTTGCAGATTACAAC 3135814 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || ||||| ||||| || || || || || | || |||| Sbjct 3135813 ATCCAAAAGGAGTCGACCCTTCACCTTGTGCTCAGGCTTCGTGGTGGTA 3135765 >seq3 Length=113259003 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| || || ||||| || ||||| | || || || || Sbjct 21885489 CATGCAGATTTTTGTTAAGACCCTAACCGGCAAGACCATCACTTTGGAAGTGGAGAGCTC 21885430 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| | || ||| || ||| | ||||||||| || | || || |||| Sbjct 21885429 CGACACCATCGACAATGTGAAAGCAAAGA-TCCAGGACAAGGAGGGAATCCCCCCAGACC 21885371 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || || |||||||| ||| | || || || || ||||||| Sbjct 21885370 AGCAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGAACGTTGGCGGATTATA 21885311 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||| || || || || || || || || || Sbjct 21885310 ACATTCAGAAGGAGTCCACCCTCCACCTTGTCCT 21885277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445700694032640