Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq2 147 3e-30
seq4 134 2e-26
seq3174 107 2e-18
seq831 107 2e-18
seq10 107 2e-18
>seq2
Length=84732013
Score = 147 bits (162), Expect = 3e-30
Identities = 261/376 (69%), Gaps = 6/376 (2%)
Strand=Plus/Minus
Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633
||| ||| || ||||||||||| || || || ||||||| | || | ||||| ||||
Sbjct 24868682 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 24868623
Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692
| || | || ||||| | || |||||||||||||| || |||| | | || | | |||
Sbjct 24868622 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCA-CAAAAGCTCCCG 24868564
Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33751
|| ||||| || ||||| || |||||| || || | |||||| | || | | ||
Sbjct 24868563 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTG 24868506
Query 33752 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810
| ||| |||||||| | ||||| ||||||||||| || ||||| || || || |
Sbjct 24868505 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 24868446
Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870
|||| | ||| || | | ||||||| || || | || | |||| | |||
Sbjct 24868445 TGGCGTGAAAAAGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCG 24868386
Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930
||||| || || || ||||| || ||||| ||||| || |||||||| || ||||
Sbjct 24868385 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCT 24868326
Query 33931 CGGTAATCTGCACTTC 33946
||| | ||| || ||
Sbjct 24868325 CGGCGACCTGGACCTC 24868310
Score = 147 bits (162), Expect = 3e-30
Identities = 261/376 (69%), Gaps = 6/376 (2%)
Strand=Plus/Plus
Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633
||| ||| || ||||||||||| || || || ||||||| | || | ||||| ||||
Sbjct 26602944 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 26603003
Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692
| || | || ||||| | || |||||||||||||| || |||| | | || | | |||
Sbjct 26603004 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCA-CAAAAGCTCCCG 26603062
Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33751
|| ||||| || ||||| || |||||| || || | |||||| | || | | ||
Sbjct 26603063 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTG 26603120
Query 33752 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810
| ||| |||||||| | ||||| ||||||||||| || ||||| || || || |
Sbjct 26603121 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 26603180
Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870
|||| | ||| || | | ||||||| || || | || | |||| | |||
Sbjct 26603181 TGGCGTGAAAAAGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCG 26603240
Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930
||||| || || || ||||| || ||||| ||||| || |||||||| || ||||
Sbjct 26603241 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCT 26603300
Query 33931 CGGTAATCTGCACTTC 33946
||| | ||| || ||
Sbjct 26603301 CGGCGACCTGGACCTC 26603316
>seq4
Length=146560859
Score = 134 bits (148), Expect = 2e-26
Identities = 173/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 63655 GACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63714
|||||| ||| || ||||||||||||||||||||||| || |||||||| | || |
Sbjct 9258805 GACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACA 9258746
Query 63715 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACA 63773
||||| ||| || | | ||| || || ||||| | ||| |||||||| || || ||
Sbjct 9258745 TTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACT 9258687
Query 63774 CGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGAT 63833
| ||| | |||||| ||||||||||| |||| || | | ||| || | ||||||
Sbjct 9258686 CTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATAGGAT 9258627
Query 63834 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
| || | |||||| |||||||| |||| || |||||||| || ||||| ||
Sbjct 9258626 CTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571
>seq3174
Length=2385
Score = 107 bits (118), Expect = 2e-18
Identities = 119/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710
||| |||||| ||| || |||||||||||||||||||||| || |||||||| |
Sbjct 1318 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1377
Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63769
|| | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || ||
Sbjct 1378 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1436
Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805
|| | ||| | |||||| ||||||||||| |||||
Sbjct 1437 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1472
>seq831
Length=51122
Score = 107 bits (118), Expect = 2e-18
Identities = 119/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710
||| |||||| ||| || |||||||||||||||||||||| || |||||||| |
Sbjct 19017 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 19076
Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63769
|| | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || ||
Sbjct 19077 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 19135
Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805
|| | ||| | |||||| ||||||||||| |||||
Sbjct 19136 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 19171
>seq10
Length=73452336
Score = 107 bits (118), Expect = 2e-18
Identities = 119/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710
||| |||||| ||| || |||||||||||||||||||||| || |||||||| |
Sbjct 1168067 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1168008
Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 63769
|| | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || ||
Sbjct 1168007 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1167949
Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805
|| | ||| | |||||| ||||||||||| |||||
Sbjct 1167948 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1167913
Score = 107 bits (118), Expect = 2e-18
Identities = 119/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710
||| |||||| ||| || |||||||||||||||||||||| || |||||||| |
Sbjct 24507686 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 24507745
Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63769
|| | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || ||
Sbjct 24507746 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 24507804
Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805
|| | ||| | |||||| ||||||||||| |||||
Sbjct 24507805 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 24507840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629724764885760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |