Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 147 3e-30 seq4 134 2e-26 seq3174 107 2e-18 seq831 107 2e-18 seq10 107 2e-18 >seq2 Length=84732013 Score = 147 bits (162), Expect = 3e-30 Identities = 261/376 (69%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || ||||||||||| || || || ||||||| | || | ||||| |||| Sbjct 24868682 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 24868623 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 | || | || ||||| | || |||||||||||||| || |||| | | || | | ||| Sbjct 24868622 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCA-CAAAAGCTCCCG 24868564 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33751 || ||||| || ||||| || |||||| || || | |||||| | || | | || Sbjct 24868563 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTG 24868506 Query 33752 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | ||| |||||||| | ||||| ||||||||||| || ||||| || || || | Sbjct 24868505 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 24868446 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 |||| | ||| || | | ||||||| || || | || | |||| | ||| Sbjct 24868445 TGGCGTGAAAAAGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCG 24868386 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 ||||| || || || ||||| || ||||| ||||| || |||||||| || |||| Sbjct 24868385 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCT 24868326 Query 33931 CGGTAATCTGCACTTC 33946 ||| | ||| || || Sbjct 24868325 CGGCGACCTGGACCTC 24868310 Score = 147 bits (162), Expect = 3e-30 Identities = 261/376 (69%), Gaps = 6/376 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || ||||||||||| || || || ||||||| | || | ||||| |||| Sbjct 26602944 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 26603003 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 | || | || ||||| | || |||||||||||||| || |||| | | || | | ||| Sbjct 26603004 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCA-CAAAAGCTCCCG 26603062 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33751 || ||||| || ||||| || |||||| || || | |||||| | || | | || Sbjct 26603063 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTG 26603120 Query 33752 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | ||| |||||||| | ||||| ||||||||||| || ||||| || || || | Sbjct 26603121 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 26603180 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 |||| | ||| || | | ||||||| || || | || | |||| | ||| Sbjct 26603181 TGGCGTGAAAAAGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCG 26603240 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 ||||| || || || ||||| || ||||| ||||| || |||||||| || |||| Sbjct 26603241 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCT 26603300 Query 33931 CGGTAATCTGCACTTC 33946 ||| | ||| || || Sbjct 26603301 CGGCGACCTGGACCTC 26603316 >seq4 Length=146560859 Score = 134 bits (148), Expect = 2e-26 Identities = 173/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 63655 GACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63714 |||||| ||| || ||||||||||||||||||||||| || |||||||| | || | Sbjct 9258805 GACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACA 9258746 Query 63715 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACA 63773 ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || || Sbjct 9258745 TTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACT 9258687 Query 63774 CGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGAT 63833 | ||| | |||||| ||||||||||| |||| || | | ||| || | |||||| Sbjct 9258686 CTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATAGGAT 9258627 Query 63834 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | || | |||||| |||||||| |||| || |||||||| || ||||| || Sbjct 9258626 CTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571 >seq3174 Length=2385 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 ||| |||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 1318 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1377 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63769 || | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 1378 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1436 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805 || | ||| | |||||| ||||||||||| ||||| Sbjct 1437 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1472 >seq831 Length=51122 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 ||| |||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 19017 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 19076 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63769 || | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 19077 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 19135 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805 || | ||| | |||||| ||||||||||| ||||| Sbjct 19136 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 19171 >seq10 Length=73452336 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 ||| |||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 1168067 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1168008 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 63769 || | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 1168007 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1167949 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805 || | ||| | |||||| ||||||||||| ||||| Sbjct 1167948 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1167913 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 ||| |||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 24507686 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 24507745 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63769 || | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 24507746 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 24507804 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805 || | ||| | |||||| ||||||||||| ||||| Sbjct 24507805 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 24507840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629724764885760