Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 1e-27
seq4 131 2e-25
seq3174 98.7 1e-15
seq831 98.7 1e-15
seq10 98.7 1e-15
>seq2
Length=84732013
Score = 138 bits (152), Expect = 1e-27
Identities = 259/376 (69%), Gaps = 6/376 (2%)
Strand=Plus/Minus
Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209
||| ||| || ||||||||||| || || || ||||||| | || | ||||| ||||
Sbjct 24868682 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 24868623
Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268
| || | || ||||| | || |||||||||||||| || |||| | |||| | | ||
Sbjct 24868622 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGG-CACAAAAGCTCCCG 24868564
Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 36327
|| |||||||| ||||| || ||||| || || | |||||| | || | | ||
Sbjct 24868563 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTG 24868506
Query 36328 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386
| ||| |||||||| | ||||| ||||||||||| || ||||| || ||||| |
Sbjct 24868505 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 24868446
Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446
| || | ||| || | | ||||||| || || | || | || | | |||
Sbjct 24868445 TGGCGTGAAAAAGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCG 24868386
Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506
||||| || || || ||||| || ||||| || || || |||||||| || ||||
Sbjct 24868385 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCT 24868326
Query 36507 CGGTAATCTGTACTTC 36522
||| | ||| || ||
Sbjct 24868325 CGGCGACCTGGACCTC 24868310
Score = 138 bits (152), Expect = 1e-27
Identities = 259/376 (69%), Gaps = 6/376 (2%)
Strand=Plus/Plus
Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209
||| ||| || ||||||||||| || || || ||||||| | || | ||||| ||||
Sbjct 26602944 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 26603003
Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268
| || | || ||||| | || |||||||||||||| || |||| | |||| | | ||
Sbjct 26603004 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGG-CACAAAAGCTCCCG 26603062
Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 36327
|| |||||||| ||||| || ||||| || || | |||||| | || | | ||
Sbjct 26603063 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTG 26603120
Query 36328 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386
| ||| |||||||| | ||||| ||||||||||| || ||||| || ||||| |
Sbjct 26603121 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 26603180
Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446
| || | ||| || | | ||||||| || || | || | || | | |||
Sbjct 26603181 TGGCGTGAAAAAGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCG 26603240
Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506
||||| || || || ||||| || ||||| || || || |||||||| || ||||
Sbjct 26603241 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCT 26603300
Query 36507 CGGTAATCTGTACTTC 36522
||| | ||| || ||
Sbjct 26603301 CGGCGACCTGGACCTC 26603316
>seq4
Length=146560859
Score = 131 bits (144), Expect = 2e-25
Identities = 172/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 66448 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 66507
||||| ||| || ||||||||||||||||||||||| || |||||||| | || |
Sbjct 9258805 GACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACA 9258746
Query 66508 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACA 66566
||||| ||| || | | ||| || || ||||| | ||| |||||||| || || ||
Sbjct 9258745 TTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACT 9258687
Query 66567 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 66626
| ||| | |||||| ||||||||||| || | ||| | | ||| || | ||||||
Sbjct 9258686 CTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATAGGAT 9258627
Query 66627 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682
| || | |||||| |||||||| |||| || |||||||| || ||||| ||
Sbjct 9258626 CTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571
Score = 89.7 bits (98), Expect = 7e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274
||| || ||||| | || | ||| |||| |||| | || || |||||||| | ||||||
Sbjct 9259125 TCCCCCTTGATCAACATAGCGAGCAGTGTCATTAAACACCCTTAACATTGGGACAATACC 9259066
Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334
||| || || || || || || ||||| || || ||||||||||||| || ||
Sbjct 9259065 ATTAGAAGTTCCGTTTGTTCCACGAATATAACTGCCCATTGCACGAATATTGTGAACAGA 9259006
Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394
| ||| ||||| || || ||| || | || || || | || ||||| ||
Sbjct 9259005 AACACCAATTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTGAGAGTGTCATATAT 9258946
Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436
|||||| ||||||||||| |||| || || || |||||
Sbjct 9258945 GCCCTCGATACTATCATCTTTCATACAAATAAGGAAGCAGCT 9258904
>seq3174
Length=2385
Score = 98.7 bits (108), Expect = 1e-15
Identities = 117/156 (75%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 66444 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503
||| ||||| ||| || |||||||||||||||||||||| || |||||||| |
Sbjct 1318 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1377
Query 66504 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 66562
|| | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || ||
Sbjct 1378 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1436
Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 66598
|| | ||| | |||||| ||||||||||| || ||
Sbjct 1437 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1472
>seq831
Length=51122
Score = 98.7 bits (108), Expect = 1e-15
Identities = 117/156 (75%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 66444 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503
||| ||||| ||| || |||||||||||||||||||||| || |||||||| |
Sbjct 19017 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 19076
Query 66504 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 66562
|| | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || ||
Sbjct 19077 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 19135
Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 66598
|| | ||| | |||||| ||||||||||| || ||
Sbjct 19136 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 19171
>seq10
Length=73452336
Score = 98.7 bits (108), Expect = 1e-15
Identities = 117/156 (75%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 66444 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503
||| ||||| ||| || |||||||||||||||||||||| || |||||||| |
Sbjct 1168067 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1168008
Query 66504 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 66562
|| | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || ||
Sbjct 1168007 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1167949
Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 66598
|| | ||| | |||||| ||||||||||| || ||
Sbjct 1167948 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1167913
Score = 98.7 bits (108), Expect = 1e-15
Identities = 117/156 (75%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 66444 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503
||| ||||| ||| || |||||||||||||||||||||| || |||||||| |
Sbjct 24507686 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 24507745
Query 66504 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 66562
|| | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || ||
Sbjct 24507746 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 24507804
Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 66598
|| | ||| | |||||| ||||||||||| || ||
Sbjct 24507805 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 24507840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658075785329280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |