Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 149 9e-31 seq4 134 2e-26 seq3174 104 3e-17 seq831 104 3e-17 seq10 104 3e-17 >seq2 Length=84732013 Score = 149 bits (164), Expect = 9e-31 Identities = 551/853 (65%), Gaps = 19/853 (2%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || ||||| || || || | || ||||| || || || || || | ||| || || Sbjct 24868965 TTCTGGTAATCCCCTACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAAC 24868906 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| |||||||||| || | | | ||| | |||| || ||||| | | | Sbjct 24868905 TCCATCCAATCAAACGGGTTCGAAGCTCCATACAACTTTTCAATCCCCAAAGCCCCCAAC 24868846 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 || | || || || ||||| |||||| |||||| || | |||||| || | | Sbjct 24868845 AAGCGGTCAGCCACGAATTCAATATATTCACTCATCAGATCCCCATTCATCCCGACCAAA 24868786 Query 49849 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 ||| || ||||| |||| || ||| || |||| || || ||||| | | || Sbjct 24868785 GCAACCGGCAGAGCATCGCA--AACAAACTCCCGTTCGATATCAACAGCATCCTTCACAA 24868728 Query 49907 TAGATCTAACGGTTTCTTCACTCGG-TGGATG--CAATAAATGTTTAAACATCAAACATG 49963 | | || | ||||| ||| | | | || || | | | ||| ||| || | Sbjct 24868727 TCCCCTTCACACTCTCTTCGCTCAGCTTGTTGTTCAGCAGAGAAT---ACAACAAGCAAG 24868671 Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 |||||||||| || || || ||||||| | || || ||||| ||||| || | || | Sbjct 24868670 CGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCG 24868611 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ACCCAGAAAAGAAGATT 50082 |||| | || |||||||||||||| || |||| | |||| | ||| || ||||| || Sbjct 24868610 GCATCAATCCGCGCTTTTTAAGCCAGAAAATGG-CACAAAAGCTCCCGGAGAAGAAAATC 24868552 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT--GTCATGTATCC 50140 ||||| || ||||| || | | |||||| | || | | || | ||| |||| Sbjct 24868551 CCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTGAGCCATCGATCC 24868494 Query 50141 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200 |||| | ||||| ||||||||||| || ||||| || || || ||||| | ||| | Sbjct 24868493 ACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAA 24868434 Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 50260 | | | ||||||| || || | || | |||| | ||| ||||| || | Sbjct 24868433 GGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACATCTCGG 24868374 Query 50261 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 50320 | || ||||| || ||||| ||||| || |||||||| || ||||||| | ||| | Sbjct 24868373 AGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGGA 24868314 Query 50321 CTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 | || | || || | || | || || || || ||||| ||| || || | Sbjct 24868313 CCTCCTTCATGAAACGGCCGGCGAGGTTCTCCAGGACGATGCCGTCGGAGGCGGCGAAGA 24868254 Query 50381 ACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATTCCAATCAT 50437 | || | || || | | || || |||| || ||||| || | ||| | Sbjct 24868253 AGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGCGGTTAGGGTTTGGTCCCAGTGGC 24868194 Query 50438 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497 |||||||| | ||| || || || | ||||| || || ||||| ||||| || | Sbjct 24868193 GGATATCTTGGCTGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGT 24868134 Query 50498 ACATATTCCAGAT 50510 |||| | |||||| Sbjct 24868133 ACATCTCCCAGAT 24868121 Score = 149 bits (164), Expect = 9e-31 Identities = 551/853 (65%), Gaps = 19/853 (2%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || ||||| || || || | || ||||| || || || || || | ||| || || Sbjct 26602661 TTCTGGTAATCCCCTACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAAC 26602720 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| |||||||||| || | | | ||| | |||| || ||||| | | | Sbjct 26602721 TCCATCCAATCAAACGGGTTCGAAGCTCCATACAACTTTTCAATCCCCAAAGCCCCCAAC 26602780 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 || | || || || ||||| |||||| |||||| || | |||||| || | | Sbjct 26602781 AAGCGGTCAGCCACGAATTCAATATATTCACTCATCAGATCCCCATTCATCCCGACCAAA 26602840 Query 49849 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 ||| || ||||| |||| || ||| || |||| || || ||||| | | || Sbjct 26602841 GCAACCGGCAGAGCATCGCA--AACAAACTCCCGTTCGATATCAACAGCATCCTTCACAA 26602898 Query 49907 TAGATCTAACGGTTTCTTCACTCGG-TGGATG--CAATAAATGTTTAAACATCAAACATG 49963 | | || | ||||| ||| | | | || || | | | ||| ||| || | Sbjct 26602899 TCCCCTTCACACTCTCTTCGCTCAGCTTGTTGTTCAGCAGAGAAT---ACAACAAGCAAG 26602955 Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 |||||||||| || || || ||||||| | || || ||||| ||||| || | || | Sbjct 26602956 CGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCG 26603015 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ACCCAGAAAAGAAGATT 50082 |||| | || |||||||||||||| || |||| | |||| | ||| || ||||| || Sbjct 26603016 GCATCAATCCGCGCTTTTTAAGCCAGAAAATGG-CACAAAAGCTCCCGGAGAAGAAAATC 26603074 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT--GTCATGTATCC 50140 ||||| || ||||| || | | |||||| | || | | || | ||| |||| Sbjct 26603075 CCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTGAGCCATCGATCC 26603132 Query 50141 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200 |||| | ||||| ||||||||||| || ||||| || || || ||||| | ||| | Sbjct 26603133 ACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAA 26603192 Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 50260 | | | ||||||| || || | || | |||| | ||| ||||| || | Sbjct 26603193 GGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACATCTCGG 26603252 Query 50261 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 50320 | || ||||| || ||||| ||||| || |||||||| || ||||||| | ||| | Sbjct 26603253 AGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGGA 26603312 Query 50321 CTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 | || | || || | || | || || || || ||||| ||| || || | Sbjct 26603313 CCTCCTTCATGAAACGGCCGGCGAGGTTCTCCAGGACGATGCCGTCGGAGGCGGCGAAGA 26603372 Query 50381 ACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATTCCAATCAT 50437 | || | || || | | || || |||| || ||||| || | ||| | Sbjct 26603373 AGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGCGGTTAGGGTTTGGTCCCAGTGGC 26603432 Query 50438 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497 |||||||| | ||| || || || | ||||| || || ||||| ||||| || | Sbjct 26603433 GGATATCTTGGCTGAGATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGT 26603492 Query 50498 ACATATTCCAGAT 50510 |||| | |||||| Sbjct 26603493 ACATCTCCCAGAT 26603505 >seq4 Length=146560859 Score = 134 bits (148), Expect = 2e-26 Identities = 173/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 80327 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 80386 ||||| ||| || ||||||||||||||||||||||| || |||||||| | |||| Sbjct 9258805 GACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACA 9258746 Query 80387 GTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACA 80445 ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || || Sbjct 9258745 TTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACT 9258687 Query 80446 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGAT 80505 | ||| | |||||| ||||||||||| || | ||| | | | ||| || | || ||| Sbjct 9258686 CTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATAGGAT 9258627 Query 80506 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 | || | |||||| |||||||| |||| || |||||||| || ||||| || Sbjct 9258626 CTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571 >seq3174 Length=2385 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 80323 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 80382 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 1318 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1377 Query 80383 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGC 80441 |||| ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 1378 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1436 Query 80442 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 80477 || | ||| | |||||| ||||||||||| || || Sbjct 1437 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1472 >seq831 Length=51122 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 80323 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 80382 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 19017 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 19076 Query 80383 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGC 80441 |||| ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 19077 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 19135 Query 80442 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 80477 || | ||| | |||||| ||||||||||| || || Sbjct 19136 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 19171 >seq10 Length=73452336 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 80323 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 80382 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 1168067 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1168008 Query 80383 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGC 80441 |||| ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 1168007 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1167949 Query 80442 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 80477 || | ||| | |||||| ||||||||||| || || Sbjct 1167948 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1167913 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 80323 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 80382 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 24507686 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 24507745 Query 80383 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGC 80441 |||| ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 24507746 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 24507804 Query 80442 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 80477 || | ||| | |||||| ||||||||||| || || Sbjct 24507805 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 24507840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718162927178880