Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 102 8e-17 >seq2 Length=84732013 Score = 102 bits (112), Expect = 8e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || || ||||| ||||| ||||| || |||| | || || ||||||||||| ||| Sbjct 24868677 AAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTT 24868618 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 || || ||||||||||| || ||||| | ||| || || ||| ||| |||||| ||| Sbjct 24868617 AACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAG 24868558 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATC 14022 || || || || || |||||| || || |||| Sbjct 24868557 AAAATCCCTTCGACGCAAGCAAAAGCGATCAATC 24868524 Score = 102 bits (112), Expect = 8e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || || ||||| ||||| ||||| || |||| | || || ||||||||||| ||| Sbjct 26602949 AAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTT 26603008 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 || || ||||||||||| || ||||| | ||| || || ||| ||| |||||| ||| Sbjct 26603009 AACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCACAAAAGCTCCCGGAGAAG 26603068 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATC 14022 || || || || || |||||| || || |||| Sbjct 26603069 AAAATCCCTTCGACGCAAGCAAAAGCGATCAATC 26603102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479657288092800