Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq6 84.2 2e-11
seq8 82.4 6e-11
>seq6
Length=78779235
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||||||||| || | || | ||| | |||| ||||| || | ||||||||| | |
Sbjct 3703536 CCTCCACGCAGCCTGAGGACAAGATGAAGAGTGGATTCCTTCTGGATATTGTAATCAGCC 3703477
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || || |||| || | |||||| || || || || | | || || || | ||
Sbjct 3703476 AGAGTCCGGCCGTCCTCGAGTTGTTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGAGGA 3703417
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061
| || || || || |||| | ||||| | ||| || ||| ||| ||||||
Sbjct 3703416 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATAGTATCGG-AGCTCTCGAC 3703358
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || |||||||||||||| || || ||||||||||||||
Sbjct 3703357 CTCCAGAGTGATGGTTTTTCCGGTTAGGGTCTTGACAAAAATTTGCAT 3703310
>seq8
Length=131339754
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941
||||||||| || |||| ||| | ||||| ||| ||||||||| | ||||| ||||
Sbjct 3136222 GCCTCCACGGAGCCTTAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGC 3136281
Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001
| ||||| | || || | || || ||||||||||| | | ||| || || | ||
Sbjct 3136282 GAGAGTACGACCATCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGG 3136341
Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060
| || || || || ||| | ||||| || | | |||||| ||| ||| |
Sbjct 3136342 AATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATTGTGTC-AGAGCTCTCAA 3136400
Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
| || | ||| || ||||| ||||| | || || |||||||| |||||
Sbjct 3136401 CCTCAAGCGTGATGGTTTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 3136449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381314791467936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |