Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 145 1e-29 seq4 131 2e-25 seq3174 95.1 2e-14 seq831 95.1 2e-14 seq10 95.1 2e-14 >seq2 Length=84732013 Score = 145 bits (160), Expect = 1e-29 Identities = 434/662 (66%), Gaps = 12/662 (2%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| || || || | || ||||| || || ||||| || | ||| || || Sbjct 24868965 TTCTGGTAATCCCCTACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAAC 24868906 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| |||||||||| || | | | ||| | |||| || ||||| | | | Sbjct 24868905 TCCATCCAATCAAACGGGTTCGAAGCTCCATACAACTTTTCAATCCCCAAAGCCCCCAAC 24868846 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || | || || | |||||| |||||| |||||| || | |||||| || | | Sbjct 24868845 AAGCGGTCAGCCACGAATTCAATATATTCACTCATCAGATCCCCATTCATCCCGACCAAA 24868786 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 ||| || ||||| | || ||| || |||| ||| || || || | | ||| Sbjct 24868785 GCAACCGGCAGAGCATCGCAAACAAACTCCCGTTCGATATCAACAGCATCCTTCACAATC 24868726 Query 42014 GATCTTACTGTTTCTTCACTCGG--TGGA-TACAATAAATGTTTAAACATCAAACATGCG 42070 | || | ||||| ||| | || | || | | | ||| ||| || ||| Sbjct 24868725 CCCTTCACACTCTCTTCGCTCAGCTTGTTGTTCAGCAGAGAAT---ACAACAAGCAAGCG 24868669 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 |||||||| || || || || |||| | || | ||||| ||||| || | || ||| Sbjct 24868668 AAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCGGC 24868609 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCC 42189 || | || |||||||||||||| || || | | |||| | | || || ||||| || || Sbjct 24868608 ATCAATCCGCGCTTTTTAAGCCAGAAAAT-GGCACAAAAGCTCCCGGAGAAGAAAATCCC 24868550 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT--GTCATGTATCCAC 42247 ||| || ||||| || || | |||||| | || | | || | ||| |||||| Sbjct 24868549 TTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTGAGCCATCGATCCAC 24868492 Query 42248 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 || | ||||| ||||||||||| || ||||| || || || ||||| | ||| || Sbjct 24868491 TTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGG 24868432 Query 42308 TAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAA 42367 | | ||||||| || || | || | |||| | ||| ||||| || || Sbjct 24868431 CGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACATCTCGGAG 24868372 Query 42368 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACT 42427 || ||||| || ||||| ||||| || |||||||| |||||||||| ||||| || Sbjct 24868371 TGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGGACC 24868312 Query 42428 TC 42429 || Sbjct 24868311 TC 24868310 Score = 145 bits (160), Expect = 1e-29 Identities = 434/662 (66%), Gaps = 12/662 (2%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| || || || | || ||||| || || ||||| || | ||| || || Sbjct 26602661 TTCTGGTAATCCCCTACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAAC 26602720 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| |||||||||| || | | | ||| | |||| || ||||| | | | Sbjct 26602721 TCCATCCAATCAAACGGGTTCGAAGCTCCATACAACTTTTCAATCCCCAAAGCCCCCAAC 26602780 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 || | || || | |||||| |||||| |||||| || | |||||| || | | Sbjct 26602781 AAGCGGTCAGCCACGAATTCAATATATTCACTCATCAGATCCCCATTCATCCCGACCAAA 26602840 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 ||| || ||||| | || ||| || |||| ||| || || || | | ||| Sbjct 26602841 GCAACCGGCAGAGCATCGCAAACAAACTCCCGTTCGATATCAACAGCATCCTTCACAATC 26602900 Query 42014 GATCTTACTGTTTCTTCACTCGG--TGGA-TACAATAAATGTTTAAACATCAAACATGCG 42070 | || | ||||| ||| | || | || | | | ||| ||| || ||| Sbjct 26602901 CCCTTCACACTCTCTTCGCTCAGCTTGTTGTTCAGCAGAGAAT---ACAACAAGCAAGCG 26602957 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 |||||||| || || || || |||| | || | ||||| ||||| || | || ||| Sbjct 26602958 AAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCGGC 26603017 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCC 42189 || | || |||||||||||||| || || | | |||| | | || || ||||| || || Sbjct 26603018 ATCAATCCGCGCTTTTTAAGCCAGAAAAT-GGCACAAAAGCTCCCGGAGAAGAAAATCCC 26603076 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT--GTCATGTATCCAC 42247 ||| || ||||| || || | |||||| | || | | || | ||| |||||| Sbjct 26603077 TTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTGAGCCATCGATCCAC 26603134 Query 42248 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 || | ||||| ||||||||||| || ||||| || || || ||||| | ||| || Sbjct 26603135 TTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAAGG 26603194 Query 42308 TAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAA 42367 | | ||||||| || || | || | |||| | ||| ||||| || || Sbjct 26603195 CGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACATCTCGGAG 26603254 Query 42368 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACT 42427 || ||||| || ||||| ||||| || |||||||| |||||||||| ||||| || Sbjct 26603255 TGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGGACC 26603314 Query 42428 TC 42429 || Sbjct 26603315 TC 26603316 >seq4 Length=146560859 Score = 131 bits (144), Expect = 2e-25 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469 ||||| ||| || ||||||||||||||||||||||| || |||||||| | |||| Sbjct 9258805 GACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACA 9258746 Query 72470 GTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACA 72528 ||||| ||| || | | ||| || || ||||| | ||| || ||||| || || || Sbjct 9258745 TTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACT 9258687 Query 72529 CGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGAT 72588 | ||| | ||| || ||||||||||| || | ||| | | | ||| || | |||||| Sbjct 9258686 CTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATAGGAT 9258627 Query 72589 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 | || | |||||| |||||||| |||| || |||||||| || ||||| || Sbjct 9258626 CTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||| | || | ||| |||| |||| | || || |||||||| | |||||| Sbjct 9259125 TCCCCCTTGATCAACATAGCGAGCAGTGTCATTAAACACCCTTAACATTGGGACAATACC 9259066 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| || | || || || || ||||| || || | |||||||||||| || || Sbjct 9259065 ATTAGAAGTTCCGTTTGTTCCACGAATATAACTGCCCATTGCACGAATATTGTGAACAGA 9259006 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| || | || || || | || ||||| || Sbjct 9259005 AACACCAATTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTGAGAGTGTCATATAT 9258946 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 |||||| ||||||||||| |||| || || || ||||| Sbjct 9258945 GCCCTCGATACTATCATCTTTCATACAAATAAGGAAGCAGCT 9258904 >seq3174 Length=2385 Score = 95.1 bits (104), Expect = 2e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 72406 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 1318 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1377 Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGC 72524 |||| ||||| ||| || | | ||| || || ||||| | ||| || ||||| || || Sbjct 1378 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1436 Query 72525 GACACGCATTAACATATGCTGAGGTCTTTCAACGAT 72560 || | ||| | ||| || ||||||||||| || || Sbjct 1437 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1472 >seq831 Length=51122 Score = 95.1 bits (104), Expect = 2e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 72406 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 19017 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 19076 Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGC 72524 |||| ||||| ||| || | | ||| || || ||||| | ||| || ||||| || || Sbjct 19077 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 19135 Query 72525 GACACGCATTAACATATGCTGAGGTCTTTCAACGAT 72560 || | ||| | ||| || ||||||||||| || || Sbjct 19136 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 19171 >seq10 Length=73452336 Score = 95.1 bits (104), Expect = 2e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 72406 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 1168067 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1168008 Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGC 72524 |||| ||||| ||| || | | ||| || || ||||| | ||| || ||||| || || Sbjct 1168007 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1167949 Query 72525 GACACGCATTAACATATGCTGAGGTCTTTCAACGAT 72560 || | ||| | ||| || ||||||||||| || || Sbjct 1167948 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1167913 Score = 95.1 bits (104), Expect = 2e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 72406 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 24507686 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 24507745 Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGC 72524 |||| ||||| ||| || | | ||| || || ||||| | ||| || ||||| || || Sbjct 24507746 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 24507804 Query 72525 GACACGCATTAACATATGCTGAGGTCTTTCAACGAT 72560 || | ||| | ||| || ||||||||||| || || Sbjct 24507805 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 24507840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671040274081920