Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-15 >seq2 Length=84732013 Score = 98.7 bits (108), Expect = 1e-15 Identities = 380/585 (65%), Gaps = 19/585 (3%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||| ||| | || ||||| |||||||| ||||| ||||||| || | Sbjct 24868098 TGTTCCCGATCAAGTACCCCTCGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCT 24868157 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAG---ACTCGTTTGA 125112 |||| | ||| ||||||||||| | | || | | | ||||| || | | | Sbjct 24868158 GGACCGCCGAGGAGGTCGATCTCAGCCAAGATATCCGCCACTGGGACCAAACCC---TAA 24868214 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | | ||||| | || | | ||| | | |||||||| |||| |||||| || | Sbjct 24868215 CCGCCGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCA 24868274 Query 125173 TCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGT 125229 ||||| || || || | | | || ||| | ||| | ||| || | |||| Sbjct 24868275 TCGTCCTGGAGAACCTCGCCGGC-CGTTTCATGAAGGAGGT--CCAGGTCGCCGAGGCCA 24868331 Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| | Sbjct 24868332 GGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTTC 24868391 Query 125290 TGATTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGC-TCTTTAACGCAATCGA 125347 | | || ||||| || |||| | | ||| | || | ||| |||| ||||| Sbjct 24868392 TCCTCGAATCCTACATCAAGGACTCCG--ATGAAAAGAGCCGCCTTTTTCACGCCATCGA 24868449 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407 || | || | | || ||||| | |||| | | ||||||||||| | | Sbjct 24868450 GACCATCCCTTGCGTCGCCAAGAAGGCCGAGTGGGCGCTGAAGTGGATCGATGGCTCAGA 24868509 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||||| |||||| ||| || | || || || ||| || || || ||||| || || Sbjct 24868510 GTCTTT---CGCCGAGAGATTGATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGG 24868566 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 || ||| ||||| || ||||| || ||||||||| | ||||| || | || Sbjct 24868567 GAGCTTTTGTGCCATTTTCTGGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTC 24868626 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | |||||||||||||| ||||| || || || || || Sbjct 24868627 AAACGAGCTCATATCTCGAGACGAAGGCCTCCATTGCGATTTCGC 24868671 Score = 98.7 bits (108), Expect = 1e-15 Identities = 380/585 (65%), Gaps = 19/585 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||| ||| | || ||||| |||||||| ||||| ||||||| || | Sbjct 26603528 TGTTCCCGATCAAGTACCCCTCGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCT 26603469 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAG---ACTCGTTTGA 125112 |||| | ||| ||||||||||| | | || | | | ||||| || | | | Sbjct 26603468 GGACCGCCGAGGAGGTCGATCTCAGCCAAGATATCCGCCACTGGGACCAAACCC---TAA 26603412 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | | ||||| | || | | ||| | | |||||||| |||| |||||| || | Sbjct 26603411 CCGCCGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCA 26603352 Query 125173 TCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGT 125229 ||||| || || || | | | || ||| | ||| | ||| || | |||| Sbjct 26603351 TCGTCCTGGAGAACCTCGCCGGC-CGTTTCATGAAGGAGGT--CCAGGTCGCCGAGGCCA 26603295 Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| | Sbjct 26603294 GGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTTC 26603235 Query 125290 TGATTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGC-TCTTTAACGCAATCGA 125347 | | || ||||| || |||| | | ||| | || | ||| |||| ||||| Sbjct 26603234 TCCTCGAATCCTACATCAAGGACTCCG--ATGAAAAGAGCCGCCTTTTTCACGCCATCGA 26603177 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407 || | || | | || ||||| | |||| | | ||||||||||| | | Sbjct 26603176 GACCATCCCTTGCGTCGCCAAGAAGGCCGAGTGGGCGCTGAAGTGGATCGATGGCTCAGA 26603117 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||||| |||||| ||| || | || || || ||| || || || ||||| || || Sbjct 26603116 GTCTTT---CGCCGAGAGATTGATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGG 26603060 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 || ||| ||||| || ||||| || ||||||||| | ||||| || | || Sbjct 26603059 GAGCTTTTGTGCCATTTTCTGGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTC 26603000 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | |||||||||||||| ||||| || || || || || Sbjct 26602999 AAACGAGCTCATATCTCGAGACGAAGGCCTCCATTGCGATTTCGC 26602955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740949967873920