Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 4e-13 seq8 84.2 2e-11 >seq6 Length=78779235 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||||| || || || || |||||||| ||| | | |||| || | ||| Sbjct 3703513 ATGAAGAGTGGATTCCTTCTGGATATTGTAATCAGCCAGAGTCCGGCCGTCCTCGAGTTG 3703454 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| |||||| | || | | ||| ||||| ||||| || || ||||| || || Sbjct 3703453 TTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTT 3703394 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || || |||||| | || || || | || |||||||| || || Sbjct 3703393 GGCCTTGACATTATCAATAGTATCGGAGCTCTCGACCTCCAGAGTGATGGTTTTTCCGGT 3703334 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||||||||| Sbjct 3703333 TAGGGTCTTGACAAAAATTTGCAT 3703310 >seq8 Length=131339754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || ||||| ||||||||||| || ||| |||| || | || Sbjct 3135791 TGAAGGGTCGACTCCTTTTGGATGTTGTAATCTGCAAGGGTTCGGCCGTCCTCAAGCTGC 3135850 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | || | | || || || || || || || || || || ||| Sbjct 3135851 TTCCCAGCGAAGATGAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGTATCTTG 3135910 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || ||||| | || || || |||||||||||||| |||||| Sbjct 3135911 GCCTTGACATTGTCGATTGTATCCGAGCTCTCCACCTCCAAGGTAATGGTTTTTCCTGTC 3135970 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || || || || |||||||||||| Sbjct 3135971 AGGGTCTTAACGAAAATTTGCATA 3135994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362127149416272