Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq6 89.7 4e-13
seq8 84.2 2e-11
>seq6
Length=78779235
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
|||||| ||||| || || || || |||||||| ||| | | |||| || | |||
Sbjct 3703513 ATGAAGAGTGGATTCCTTCTGGATATTGTAATCAGCCAGAGTCCGGCCGTCCTCGAGTTG 3703454
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
||| |||||| | || | | ||| ||||| ||||| || || ||||| || ||
Sbjct 3703453 TTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTT 3703394
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
| ||| ||| | || || |||||| | || || || | || |||||||| || ||
Sbjct 3703393 GGCCTTGACATTATCAATAGTATCGGAGCTCTCGACCTCCAGAGTGATGGTTTTTCCGGT 3703334
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||||||||||||
Sbjct 3703333 TAGGGTCTTGACAAAAATTTGCAT 3703310
>seq8
Length=131339754
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|||||||| || || ||||| ||||||||||| || ||| |||| || | ||
Sbjct 3135791 TGAAGGGTCGACTCCTTTTGGATGTTGTAATCTGCAAGGGTTCGGCCGTCCTCAAGCTGC 3135850
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| |||||| | || | | || || || || || || || || || || |||
Sbjct 3135851 TTCCCAGCGAAGATGAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGTATCTTG 3135910
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| ||| | || || ||||| | || || || |||||||||||||| ||||||
Sbjct 3135911 GCCTTGACATTGTCGATTGTATCCGAGCTCTCCACCTCCAAGGTAATGGTTTTTCCTGTC 3135970
Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364
|| || || || ||||||||||||
Sbjct 3135971 AGGGTCTTAACGAAAATTTGCATA 3135994
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362127149416272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |