Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq8 102 7e-17 seq3 89.7 4e-13 >seq8 Length=131339754 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | ||| | ||| | || ||||||||||| || |||||||| || Sbjct 3135767 CCACCACGAAGCCTGAGCACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCTGCA 3135826 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | ||||||| ||||| || || || | || || |||||||||||| ||| Sbjct 3135827 AGGGTTCGGCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGGGGG 3135886 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | |||||| || || || || || || | | ||| ||||| | || |||| Sbjct 3135887 ATGCCCTCCTTATCCTGTATCTTGGCCTTGACATTGTCGATTGTATC-CGAGCTCTCCAC 3135945 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||||||||| ||||| | || || || ||||||||||| Sbjct 3135946 CTCCAAGGTAATGGTTTTTCCTGTCAGGGTCTTAACGAAAATTTGCAT 3135993 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| || || || || || | || | | ||||| ||||| || || Sbjct 3136481 GTCGACTCCTTTTGGATGTTATAGTCAGCAAGGGTACGGCCATCCTCAAGCTGCTTCCCA 3136540 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || |||||||| ||| ||| | |||||| ||||| ||||| || Sbjct 3136541 GCAAAAATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTG 3136600 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || ||| ||| || | ||| |||||||| ||||| || || Sbjct 3136601 ACATTGTCGATTGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTTTTTCCTGTCAAGGTC 3136660 Query 19025 TTGACAAAAATTTGCAT 19041 ||||||||||| ||||| Sbjct 3136661 TTGACAAAAATCTGCAT 3136677 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| || |||||||| || | || | ||||||| ||||| || ||| Sbjct 3136025 GTGGACTCCTTTTGGATGTTGTAATCTGCTAGGGTGCGGCCGTCCTCAAGCTGCTTCCCC 3136084 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || |||||||| || ||| | ||||||||||| |||||| ||| Sbjct 3136085 GCAAAAATGAGCCTCTGCTGGTCTGGGGGGATACCCTCTTTGTCCTGAATTTTGGCTTTG 3136144 Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTTTTACCTGTTAAA 19021 || | | ||| || | ||| |||| || || | ||| |||||||| || || | Sbjct 3136145 ACATTGTCGATTGT---GTCAGAGCTCTCGACCTCAAGGGTGATGGTTTTGCCAGTCAGT 3136201 Query 19022 GTTTTGACAAAAATTTGCAT 19041 || || || || || ||||| Sbjct 3136202 GTCTTAACGAAGATCTGCAT 3136221 >seq3 Length=113259003 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | || ||| | ||||| || | || |||||||| || || ||||| || || Sbjct 21885718 CCTCCCCTCAGCCTGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 21885777 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||| ||| || || ||| |||| || |||||||| || ||| Sbjct 21885778 AGGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGG 21885837 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| ||| || |||||| | | ||| || || |||| | Sbjct 21885838 ATGCCCTCCTTGTCCTGAATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCACT 21885897 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || || || || || | || ||||||||||| ||||| Sbjct 21885898 TCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 21885944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414513219670048