Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq8 102 7e-17
seq3 89.7 4e-13
>seq8
Length=131339754
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| || || | ||| | ||| | ||| | || ||||||||||| || |||||||| ||
Sbjct 3135767 CCACCACGAAGCCTGAGCACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCTGCA 3135826
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| | ||||||| ||||| || || || | || || |||||||||||| |||
Sbjct 3135827 AGGGTTCGGCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGGGGG 3135886
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993
| |||||| || || || || || || | | ||| ||||| | || ||||
Sbjct 3135887 ATGCCCTCCTTATCCTGTATCTTGGCCTTGACATTGTCGATTGTATC-CGAGCTCTCCAC 3135945
Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | |||||||||||| ||||| | || || || |||||||||||
Sbjct 3135946 CTCCAAGGTAATGGTTTTTCCTGTCAGGGTCTTAACGAAAATTTGCAT 3135993
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||||||||| || || || || || | || | | ||||| ||||| || ||
Sbjct 3136481 GTCGACTCCTTTTGGATGTTATAGTCAGCAAGGGTACGGCCATCCTCAAGCTGCTTCCCA 3136540
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| |||| || |||||||| ||| ||| | |||||| ||||| ||||| ||
Sbjct 3136541 GCAAAAATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTG 3136600
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | ||| || ||| ||| || | ||| |||||||| ||||| || ||
Sbjct 3136601 ACATTGTCGATTGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTTTTTCCTGTCAAGGTC 3136660
Query 19025 TTGACAAAAATTTGCAT 19041
||||||||||| |||||
Sbjct 3136661 TTGACAAAAATCTGCAT 3136677
Score = 87.8 bits (96), Expect = 1e-12
Identities = 142/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||||||||| || |||||||| || | || | ||||||| ||||| || |||
Sbjct 3136025 GTGGACTCCTTTTGGATGTTGTAATCTGCTAGGGTGCGGCCGTCCTCAAGCTGCTTCCCC 3136084
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| |||| || |||||||| || ||| | ||||||||||| |||||| |||
Sbjct 3136085 GCAAAAATGAGCCTCTGCTGGTCTGGGGGGATACCCTCTTTGTCCTGAATTTTGGCTTTG 3136144
Query 18965 ACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTTTTACCTGTTAAA 19021
|| | | ||| || | ||| |||| || || | ||| |||||||| || || |
Sbjct 3136145 ACATTGTCGATTGT---GTCAGAGCTCTCGACCTCAAGGGTGATGGTTTTGCCAGTCAGT 3136201
Query 19022 GTTTTGACAAAAATTTGCAT 19041
|| || || || || |||||
Sbjct 3136202 GTCTTAACGAAGATCTGCAT 3136221
>seq3
Length=113259003
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||| | || ||| | ||||| || | || |||||||| || || ||||| || ||
Sbjct 21885718 CCTCCCCTCAGCCTGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 21885777
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | | ||||||| ||| || || ||| |||| || |||||||| || |||
Sbjct 21885778 AGGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGG 21885837
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| |||||| ||||| ||| || |||||| | | ||| || || |||| |
Sbjct 21885838 ATGCCCTCCTTGTCCTGAATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCACT 21885897
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | ||| || || || || || | || ||||||||||| |||||
Sbjct 21885898 TCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 21885944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414513219670048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |