Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 5e-12 >seq2 Length=84732013 Score = 86.0 bits (94), Expect = 5e-12 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| || || || ||||| || || | ||||| |||| | ||| ||||||||||||| Sbjct 24868682 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 24868623 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC- 13261 | |||| |||||||| | || || ||||||| ||| || || ||| |||| | ||| Sbjct 24868622 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCA-CAAAAGCTCCCG 24868564 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTC 13305 || || || || ||||| || ||||| || ||||| || || Sbjct 24868563 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTC 24868520 Score = 86.0 bits (94), Expect = 5e-12 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| || || || ||||| || || | ||||| |||| | ||| ||||||||||||| Sbjct 26602944 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 26603003 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC- 13261 | |||| |||||||| | || || ||||||| ||| || || ||| |||| | ||| Sbjct 26603004 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCA-CAAAAGCTCCCG 26603062 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTC 13305 || || || || ||||| || ||||| || ||||| || || Sbjct 26603063 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTC 26603106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430920461364384