Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 161 2e-34 seq6 134 3e-26 seq5 134 3e-26 seq8 116 9e-21 seq9 91.5 3e-13 >seq3 Length=113259003 Score = 161 bits (178), Expect = 2e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || | ||| | ||||| || ||||| || ||||||||| Sbjct 21885943 ATGCCTCCCCTCAGCCTGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTATAGTCA 21886002 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || |||| || || || || || ||||||||||| || |||||||| || || || Sbjct 21886003 GCGAGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGG 21886062 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || ||||| || || ||||| ||||| ||||||||||| || | ||||||| || | || Sbjct 21886063 GGGATTCCCTCCTTGTCCTGGATCTTGGCTTTTACATTGTCAATGGTATCG-GAGCTCTC 21886121 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| ||||| || || || || || |||||||| Sbjct 21886122 AACCTCGAGAGTAATCGTCTTCCCAGTGAGGGTCTTGACGAAAATCTGCAT 21886172 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || | ||| | || || || ||||| || || |||||| Sbjct 21885715 ATGCCTCCCCTCAGCCTGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCA 21885774 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || | || || ||||||||||| |||||||| || || || Sbjct 21885775 GCAAGGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGG 21885834 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||||||||| ||||||||||| || | ||| || || | || Sbjct 21885835 GGGATGCCCTCCTTGTCCTGAATCTTGGCTTTTACATTGTCGATGGTGTC-TGAGCTCTC 21885893 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || |||||||| ||||| || || || ||||| |||||||| Sbjct 21885894 CACTTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 21885944 Score = 125 bits (138), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || || || | || || || ||||| || ||||||||| Sbjct 21885487 ATGCCTCCCCTCAGCCTCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCA 21885546 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || || || || |||||||| | |||||| || || || Sbjct 21885547 GCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGG 21885606 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || ||||| || || ||||| ||||||||||| ||||| || | ||| ||| || | || Sbjct 21885607 GGGATTCCCTCCTTGTCCTGGATCTTTGCTTTCACATTGTCGATGGTGTCG-GAGCTCTC 21885665 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| || || || || || ||||| |||||||| Sbjct 21885666 CACTTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCAT 21885716 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||| || | | |||| || || || || || || ||| Sbjct 21885292 GTGGACTCCTTCTGAATGTTATAATCCGCCAACGTTCGCCCATCCTCAAGCTGCTTGCCA 21885351 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || || || ||||| || || ||||| ||||||||||| Sbjct 21885352 GCAAAGATAAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTTGCTTTC 21885411 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| ||| || | || || || | || || ||||| || || || || Sbjct 21885412 ACATTGTCGATGGTGTCG-GAGCTCTCCACTTCCAAAGTGATGGTCTTGCCGGTTAGGGT 21885470 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 21885471 CTTAACAAAAATCTGCAT 21885488 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||| || || ||||| || || ||||| | || || | || || Sbjct 21885048 AAGCACCAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTACGTCCATC 21885107 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || ||||||||||| || ||||| || || || || || Sbjct 21885108 CTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGGTCCGGAGGGATCCCCTCCTTGTC 21885167 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||| ||||| || || ||||| || | || ||| || | || ||||| || || || | Sbjct 21885168 CTGGATCTTCGCCTTCACATTGTCAATCGTGTCG-GAGCTCTCCACCTCCAGGGTGATGG 21885226 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || ||||| |||||||| Sbjct 21885227 TCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 21885260 >seq6 Length=78779235 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||||| || || ||||| | || ||||| ||||| ||||| || ||| Sbjct 3703539 ATTCCTCCACGCAGCCTGAGGACAAGATGAAGAGTGGATTCCTTCTGGATATTGTAATCA 3703480 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | ||||| || |||||||||||||| || || ||||| || || || ||| Sbjct 3703479 GCCAGAGTCCGGCCGTCCTCGAGTTGTTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGA 3703420 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || || || ||||| || || ||||| || | |||||| || | || Sbjct 3703419 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATAGTATCG-GAGCTCTC 3703361 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || || || || || || ||||| || ||||| Sbjct 3703360 GACCTCCAGAGTGATGGTTTTTCCGGTTAGGGTCTTGACAAAAATTTGCAT 3703310 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || ||||| | ||||| || || || || || || || Sbjct 3703083 ATGCCACCCCTGAGACGAAGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCC 3703024 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || ||||| ||||| || || || | || || || ||| Sbjct 3703023 GCAAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGTTGCTGGTCGGGA 3702964 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||||||||| ||||| || | ||| || | ||| Sbjct 3702963 GGGATCCCTTCCTTGTCCTGGATCTTTGCTTTAACATTGTCGATGGTGTCAGAGGATTCA 3702904 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || ||||| || || |||||||| ||||| |||||||| Sbjct 3702903 ACCTCGAGTGTGATTGTCTTGCCGGTTAGTGTTTTCACAAAGATCTGCAT 3702854 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| | || ||||| | || || || |||||||| |||||||| | | ||| | Sbjct 3703299 AGCCTCAAAACAAGATGCAGGGTTGACTCCTTCTGAATGTTATAGTCGGCCAAAGTACGG 3703240 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || ||||||||||| || | ||| || || || ||||| || || || Sbjct 3703239 CCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCCGGAGGAATGCCCTCC 3703180 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || || || ||||| || || ||||| || | |||||| || | || ||||| | || Sbjct 3703179 TTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATCG-GAGCTCTCGACCTCCAACGT 3703121 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || ||||| |||||||| Sbjct 3703120 TATGGTTTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 3703082 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || ||||||||||| || |||| ||||| || || || Sbjct 3703978 AAGCACAAGGTGGAGAGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTCCCATC 3703919 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || || || || || | |||||| ||||| || || || || || ||||| Sbjct 3703918 TTCAAGCTGCTTCCCTGCGAAGATCAACCTCTGCTGATCCGGCGGAATCCCCTCCTTATC 3703859 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||| ||||| || || || || || | || || || | || ||||| | || || | Sbjct 3703858 CTGTATCTTCGCCTTGACGTTGTCGATCGTGTC-AGAGCTCTCCACCTCCAAGGTGATCG 3703800 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || | || || |||||||||||||| Sbjct 3703799 TCTTCCCCGTCAAGGTCTTGACAAATATCTGCAT 3703766 >seq5 Length=131469567 Score = 134 bits (148), Expect = 3e-26 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| ||||| | |||||||| | || || |||||||| || || || |||| Sbjct 77212196 TTCCTCCTCTAAGCCTCAAAACTAGATGAAGAGTTGACTCTTTCTGTATGTTGTAATCAG 77212137 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || || || || ||||| | ||| ||||||||||||||||||||||| |||||||||| Sbjct 77212136 CCAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAGCCTCTGCTGATCAGGAG 77212077 Query 104451 GTATTCCTTCTTTATCCTG 104469 |||| || ||||||||||| Sbjct 77212076 GTATACCCTCTTTATCCTG 77212058 Score = 131 bits (144), Expect = 4e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 104328 TTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387 || |||| || || ||||| || || ||||| | ||| || || |||||||| || || | Sbjct 128086105 TTGTTCCACCCCTCAGCCTGAGAACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAAT 128086046 Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 ||| || || | ||| ||||| |||||||||||||||||||| | |||||| ||||||| Sbjct 128086045 CAGCAAGGGTGCGACCATCTTCCAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGATCAG 128085986 Query 104448 GAGGTATTCCTTCTTTATCCTG 104469 ||||||| || || |||||||| Sbjct 128085985 GAGGTATCCCCTCCTTATCCTG 128085964 >seq8 Length=131339754 Score = 116 bits (128), Expect = 9e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| | ||| || ||||| | || || || || || || ||||||||| Sbjct 3136448 ATGCCACCTCTTAGACGAAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTATAGTCA 3136507 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || || || ||||||||||| |||||||| || || || Sbjct 3136508 GCAAGGGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGGTCCGGG 3136567 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||| || || || || ||||| || | || ||| || | || Sbjct 3136568 GGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATTGTGTCG-GAGCTCTC 3136626 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || || || | || || ||||| |||||||| Sbjct 3136627 GACCTCAAGGGTGATGGTTTTTCCTGTCAAGGTCTTGACAAAAATCTGCAT 3136677 >seq9 Length=68543460 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 |||||||| ||||| ||||| ||||| ||||| || | ||| ||||| || ||||| Sbjct 1090669 CCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCG 1090728 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || ||||| || ||||| ||||| |||||||||||| Sbjct 1090729 AGAGTGATTGTTTTCCCAGTTAGGGTTTTGACAAAGATCTGCATTTTG 1090776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151224440972736