Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8 91.5 1e-13 seq6 84.2 2e-11 >seq8 Length=131339754 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | ||| | |||||| ||| ||||||||| |||||||| || || Sbjct 3135538 ACCACCACGAAGCCTGAGCACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCTGC 3135597 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || | ||||| |||||||| || || | || | | |||||| ||| | Sbjct 3135598 TAGAGTGCGGC-CATCCTCGAGCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCCGGGG 3135656 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| || || ||| | | | |||||||| | |||| Sbjct 3135657 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTGTCAATGGTATCCGAGCTCTCCA 3135716 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || ||||| ||||| ||||||||||| Sbjct 3135717 CCTCAAGAGTGATGGTCTTCCCCGTAAGAGTCTTCACGAAAATCTGCAT 3135765 >seq6 Length=78779235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/215 (71%), Gaps = 13/215 (6%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGT 48593 ||||||||| ||||||||||| || || ||| | | ||||| ||||| || || || Sbjct 3703045 CTCCTTTTGGATGTTGTAATCCGC-AAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCGA 3702987 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--- 48650 | || | ||| ||||| || || | | |||||||||| || || ||||| | Sbjct 3702986 AGATGAGACGTTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTT-TGCTTTAACA 3702928 Query 48651 TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTT 48710 | | || ||||| || | || || ||||| ||| || || || ||||| || |||| Sbjct 3702927 TTGTCG--ATGGTGTCAGAGGATTCAACCTCGAGTGTGATTGTCTTGCCGGTTAGTGTTT 3702870 Query 48711 TCACAAAAATCTGCATCGTGTCTTGATCGAAGAAA 48745 ||||||| ||||||||| ||| || ||||||| Sbjct 3702869 TCACAAAGATCTGCATC-TGT----ATAGAAGAAA 3702840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421190659883792