Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq7 107 1e-18 seq5 105 3e-18 >seq7 Length=151357931 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 132442435 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 132442376 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 132442375 CAACTGAGCTAATAGGCC 132442358 Score = 91.5 bits (100), Expect = 8e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG-CT 11506 || ||| ||||||||| | | |||||||| |||||||||||||| |||||||||| || Sbjct 68923385 AAACAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA-TAGCACGACGCCT 68923327 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||| |||| Sbjct 68923326 CTAACCAACTGAGCTAATAGGCC 68923304 >seq5 Length=131469567 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 14565649 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 14565590 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 14565589 TGAGCTAATAGGCCG 14565575 Lambda K H 0.639 0.410 0.922 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261453619792192