Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq6 140 3e-28
seq8 123 2e-23
seq3 104 2e-17
>seq6
Length=78779235
Score = 140 bits (154), Expect = 3e-28
Identities = 176/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || ||||| | || | ||| || | |||| || || ||||| || |
Sbjct 3703321 AAAAATTTGCATGCCTCCACGCAGCCTCAAAACAAGATGCAGGGTTGACTCCTTCTGAAT 3703262
Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887
|||||| ||| || ||| | |||||| ||||| ||||| ||||||| || |||||
Sbjct 3703261 GTTATAGTCGGCCAAAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTTTG 3703202
Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947
||| || |||||||| || || ||||| | || || |||||||| | | | ||| ||
Sbjct 3703201 CTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATC 3703142
Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | ||||| || | ||| |||||||| ||||| || || || ||||||||||||||
Sbjct 3703141 GGAGCTCTCGACCTCCAACGTTATGGTTTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 3703082
Query 95008 GC 95009
||
Sbjct 3703081 GC 3703080
Score = 105 bits (116), Expect = 6e-18
Identities = 145/199 (73%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868
||||| |||||||| | ||| ||||| | || || || | |||||| |||||||| |
Sbjct 3703050 GTAGACTCCTTTTGGATGTTGTAATC-CGCA-AGGGTCCGGCCATCCTCAAGCTGTTTGC 3702993
Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928
| | ||||| | | |||||| || ||||| || ||||| ||||| | || ||||| |
Sbjct 3702992 CAGCGAAGATGAGACGTTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTTTGCTT 3702933
Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988
| || | ||| ||||||| | || || || | ||||| || || || || || |
Sbjct 3702932 TAACATTGTCGATGGTGTCAGAGGATTCAACCTCGAGTGTGATTGTCTTGCCGGTTAGTG 3702873
Query 94989 TTTTCACAAAGATCTGCAT 95007
|||||||||||||||||||
Sbjct 3702872 TTTTCACAAAGATCTGCAT 3702854
Score = 100 bits (110), Expect = 3e-16
Identities = 149/210 (71%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859
|||| || | ||| |||||||| || | || ||||| || ||| | ||||| |
Sbjct 3703517 CAAGATGAAGAGTGGATTCCTTCTGGATATTGTAATCAGCCAGAGTCCGGCCGTCCTCGA 3703458
Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919
| |||||||| | ||||| | |||||||| || |||||||| || || ||||| | |
Sbjct 3703457 GTTGTTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGA 3703398
Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979
| || |||||||| | | ||| || | | ||||| || | |||||||||||||
Sbjct 3703397 TCTTGGCCTTGACATTATCAATAGTATCGGAGCTCTCGACCTCCAGAGTGATGGTTTTTC 3703338
Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
| || || || || ||||| || |||||||
Sbjct 3703337 CGGTTAGGGTCTTGACAAAAATTTGCATGC 3703308
>seq8
Length=131339754
Score = 123 bits (136), Expect = 2e-23
Identities = 149/200 (75%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869
|| || |||||||| | ||| ||||| ||| | ||| | ||||| ||||| || ||
Sbjct 3136025 GTGGACTCCTTTTGGATGTTGTAATCTGCT-AGGGTGCGGCCGTCCTCAAGCTGCTTCCC 3136083
Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929
|||| || | || ||||| ||||| || ||||| |||||||| | |||||| || ||
Sbjct 3136084 CGCAAAAATGAGCCTCTGCTGGTCTGGGGGGATACCCTCTTTGTCCTGAATTTTGGCTTT 3136143
Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989
||| | ||| ||||||| | ||||| |||| ||||||||||| ||||| || ||
Sbjct 3136144 GACATTGTCGATTGTGTCAGAGCTCTCGACCTCAAGGGTGATGGTTTTGCCAGTCAGTGT 3136203
Query 94990 TTTCACAAAGATCTGCATGC 95009
|| || |||||||||||||
Sbjct 3136204 CTTAACGAAGATCTGCATGC 3136223
Score = 111 bits (122), Expect = 1e-19
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| || |||||||| | ||| || ||| | ||| |||||| ||||| || |||
Sbjct 3136253 GTGGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCATCCTCAAGCTGCTTCCCG 3136312
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
|||| || | || ||||| ||||| ||||| || || ||||| | ||||| ||||||
Sbjct 3136313 GCAAAAATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTG 3136372
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
|| | ||| ||||||| | || || |||| |||||||||||| || || | ||
Sbjct 3136373 ACATTGTCGATTGTGTCAGAGCTCTCAACCTCAAGCGTGATGGTTTTGCCGGTCAAGGTC 3136432
Query 94991 TTCACAAAGATCTGCATGC 95009
|| ||||| ||||||||||
Sbjct 3136433 TTGACAAAAATCTGCATGC 3136451
Score = 98.7 bits (108), Expect = 9e-16
Identities = 141/199 (71%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| || |||||||| | |||||| || | || | |||||| ||||| || ||
Sbjct 3136481 GTCGACTCCTTTTGGATGTTATAGTCAGCAAGGGTACGGCCATCCTCAAGCTGCTTCCCA 3136540
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
|||| || | || ||||| || || || || || || ||||| | ||||| ||||||
Sbjct 3136541 GCAAAAATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTG 3136600
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
|| | ||| ||||| | | ||||| |||| |||||||||||||| || | ||
Sbjct 3136601 ACATTGTCGATTGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTTTTTCCTGTCAAGGTC 3136660
Query 94991 TTCACAAAGATCTGCATGC 95009
|| ||||| ||||||||||
Sbjct 3136661 TTGACAAAAATCTGCATGC 3136679
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||| || || ||||| | || || | || ||||| ||||| || || || || ||
Sbjct 3136750 ATCCTCGAGTTGCTTTCCTGCGAAAATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTT 3136809
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || || ||||| | | | |||||| | | || || |||| |||||
Sbjct 3136810 GTCCTGGATCTTGGCTTTGACATTGTCAATAGTGTCTGAGCTCTCCACCTCAAGGGTGAT 3136869
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| ||||| ||||| || |||||||||||||||||
Sbjct 3136870 AGTCTTTCCTGTAAGTGTCTTCACAAAGATCTGCAT 3136905
>seq3
Length=113259003
Score = 104 bits (114), Expect = 2e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| |||||||| ||| ||||||| | ||||||||| || || || || || || |||
Sbjct 21886246 TCCTCAAGCTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTTG 21886305
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||||| || ||||| | | ||||||| ||||| || | ||||||
Sbjct 21886306 TCCTGGATTTTGGCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCGAGAGTGATG 21886365
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || ||||||||||||||||||||
Sbjct 21886366 GTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 21886400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448225121877120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |