Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 140 3e-28 seq8 123 2e-23 seq3 104 2e-17 >seq6 Length=78779235 Score = 140 bits (154), Expect = 3e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||| | || | ||| || | |||| || || ||||| || | Sbjct 3703321 AAAAATTTGCATGCCTCCACGCAGCCTCAAAACAAGATGCAGGGTTGACTCCTTCTGAAT 3703262 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||| ||| || ||| | |||||| ||||| ||||| ||||||| || ||||| Sbjct 3703261 GTTATAGTCGGCCAAAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTTTG 3703202 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || |||||||| || || ||||| | || || |||||||| | | | ||| || Sbjct 3703201 CTGGTCCGGAGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATC 3703142 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | ||| |||||||| ||||| || || || |||||||||||||| Sbjct 3703141 GGAGCTCTCGACCTCCAACGTTATGGTTTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 3703082 Query 95008 GC 95009 || Sbjct 3703081 GC 3703080 Score = 105 bits (116), Expect = 6e-18 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||| |||||||| | ||| ||||| | || || || | |||||| |||||||| | Sbjct 3703050 GTAGACTCCTTTTGGATGTTGTAATC-CGCA-AGGGTCCGGCCATCCTCAAGCTGTTTGC 3702993 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | | ||||| | | |||||| || ||||| || ||||| ||||| | || ||||| | Sbjct 3702992 CAGCGAAGATGAGACGTTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTTTGCTT 3702933 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || | ||| ||||||| | || || || | ||||| || || || || || | Sbjct 3702932 TAACATTGTCGATGGTGTCAGAGGATTCAACCTCGAGTGTGATTGTCTTGCCGGTTAGTG 3702873 Query 94989 TTTTCACAAAGATCTGCAT 95007 ||||||||||||||||||| Sbjct 3702872 TTTTCACAAAGATCTGCAT 3702854 Score = 100 bits (110), Expect = 3e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||| |||||||| || | || ||||| || ||| | ||||| | Sbjct 3703517 CAAGATGAAGAGTGGATTCCTTCTGGATATTGTAATCAGCCAGAGTCCGGCCGTCCTCGA 3703458 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 | |||||||| | ||||| | |||||||| || |||||||| || || ||||| | | Sbjct 3703457 GTTGTTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGGA 3703398 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || |||||||| | | ||| || | | ||||| || | ||||||||||||| Sbjct 3703397 TCTTGGCCTTGACATTATCAATAGTATCGGAGCTCTCGACCTCCAGAGTGATGGTTTTTC 3703338 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || || ||||| || ||||||| Sbjct 3703337 CGGTTAGGGTCTTGACAAAAATTTGCATGC 3703308 >seq8 Length=131339754 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 || || |||||||| | ||| ||||| ||| | ||| | ||||| ||||| || || Sbjct 3136025 GTGGACTCCTTTTGGATGTTGTAATCTGCT-AGGGTGCGGCCGTCCTCAAGCTGCTTCCC 3136083 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 |||| || | || ||||| ||||| || ||||| |||||||| | |||||| || || Sbjct 3136084 CGCAAAAATGAGCCTCTGCTGGTCTGGGGGGATACCCTCTTTGTCCTGAATTTTGGCTTT 3136143 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| | ||| ||||||| | ||||| |||| ||||||||||| ||||| || || Sbjct 3136144 GACATTGTCGATTGTGTCAGAGCTCTCGACCTCAAGGGTGATGGTTTTGCCAGTCAGTGT 3136203 Query 94990 TTTCACAAAGATCTGCATGC 95009 || || ||||||||||||| Sbjct 3136204 CTTAACGAAGATCTGCATGC 3136223 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | ||| || ||| | ||| |||||| ||||| || ||| Sbjct 3136253 GTGGACTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCATCCTCAAGCTGCTTCCCG 3136312 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| || | || ||||| ||||| ||||| || || ||||| | ||||| |||||| Sbjct 3136313 GCAAAAATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTG 3136372 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | ||| ||||||| | || || |||| |||||||||||| || || | || Sbjct 3136373 ACATTGTCGATTGTGTCAGAGCTCTCAACCTCAAGCGTGATGGTTTTGCCGGTCAAGGTC 3136432 Query 94991 TTCACAAAGATCTGCATGC 95009 || ||||| |||||||||| Sbjct 3136433 TTGACAAAAATCTGCATGC 3136451 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | |||||| || | || | |||||| ||||| || || Sbjct 3136481 GTCGACTCCTTTTGGATGTTATAGTCAGCAAGGGTACGGCCATCCTCAAGCTGCTTCCCA 3136540 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| || | || ||||| || || || || || || ||||| | ||||| |||||| Sbjct 3136541 GCAAAAATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTG 3136600 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | ||| ||||| | | ||||| |||| |||||||||||||| || | || Sbjct 3136601 ACATTGTCGATTGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTTTTTCCTGTCAAGGTC 3136660 Query 94991 TTCACAAAGATCTGCATGC 95009 || ||||| |||||||||| Sbjct 3136661 TTGACAAAAATCTGCATGC 3136679 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || || ||||| | || || | || ||||| ||||| || || || || || Sbjct 3136750 ATCCTCGAGTTGCTTTCCTGCGAAAATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTT 3136809 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || || ||||| | | | |||||| | | || || |||| ||||| Sbjct 3136810 GTCCTGGATCTTGGCTTTGACATTGTCAATAGTGTCTGAGCTCTCCACCTCAAGGGTGAT 3136869 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || ||||||||||||||||| Sbjct 3136870 AGTCTTTCCTGTAAGTGTCTTCACAAAGATCTGCAT 3136905 >seq3 Length=113259003 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| |||||||| ||| ||||||| | ||||||||| || || || || || || ||| Sbjct 21886246 TCCTCAAGCTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCAGGGGGGATCCCCTCCTTG 21886305 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || ||||| | | ||||||| ||||| || | |||||| Sbjct 21886306 TCCTGGATTTTGGCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCGAGAGTGATG 21886365 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||||||||||||||| Sbjct 21886366 GTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 21886400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448225121877120