Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 116 6e-22 seq1 113 7e-21 seq6 109 9e-20 seq5 104 4e-18 seq8 82.4 1e-11 >seq2 Length=84732013 Score = 116 bits (128), Expect = 6e-22 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||| ||||| || ||||| || ||||| || || ||||| || Sbjct 2818816 GACAACATCCAGGGGATCACGAAGCCGGCCATCCGCCGCCTGGCCCGGCGCGGTGGCGTG 2818757 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || || |||| || |||| || | || | |||||||||||| || Sbjct 2818756 AAGCGCATCAGCGGTCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGATCTTCCTCGAG 2818697 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| ||| || || || ||| || |||||||| | || ||||| |||||| || Sbjct 2818696 AACGTCATCAGGGACGCCGTCACCTACACGGAGCACGCCAGGCGCAAGACCGTCACCGCC 2818637 Query 16640 ATGGATATCGTCTATGC 16656 ||||| ||||||| || Sbjct 2818636 ATGGACGTCGTCTACGC 2818620 >seq1 Length=132393784 Score = 113 bits (124), Expect = 7e-21 Identities = 144/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| ||| |||| ||||| || ||||| || ||||| || || ||||| || Sbjct 58429360 GACAACATCCAGGGA-TCACGAAGCCGGCCATCCGCCGCCTGGCCCGGCGCGGTGGCGTG 58429418 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || || |||| || |||| || | || | |||||||||||| || Sbjct 58429419 AAGCGCATCAGCGGTCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGATCTTCCTCGAG 58429478 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| ||| || || || ||| || |||||||| | || ||||| |||||| || Sbjct 58429479 AACGTCATCAGGGACGCCGTCACCTACACGGAGCACGCCAGGCGCAAGACCGTCACCGCC 58429538 Query 16640 ATGGATATCGTCTATGC 16656 ||||| ||||||| || Sbjct 58429539 ATGGACGTCGTCTACGC 58429555 >seq6 Length=78779235 Score = 109 bits (120), Expect = 9e-20 Identities = 180/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | || || || |||||||| || ||||||||||| || ||| Sbjct 66021163 GCAAAGCGCCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATC 66021104 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || || || || || ||||||||| | || || ||| | || || || | Sbjct 66021103 CGCCGCCTCGCCCGCCGAGGCGGAGTCAAGAGGATCAGCGGGTTGATTTACGAGGAAACG 66021044 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||||||| || |||||| ||| ||| |||| || || | || |||||| Sbjct 66021043 AGGGGGGTTTTGAAAATTTTCCTCGAGAACGTGATCCGCGACGCCGTGACGTACACCGAG 66020984 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | | ||||| || || | ||||| |||| || || ||||| | || ||| Sbjct 66020983 CACGCCAGGAGGAAGACGGTGACGGCGATGGACGTCGTTTACGCTTTGAAGAGGCAGGGC 66020924 Query 16673 CGTAAGATTTATGGTTTTGG 16692 | | | ||||| ||||| Sbjct 66020923 AGGACTTTGTATGGATTTGG 66020904 >seq5 Length=131469567 Score = 104 bits (114), Expect = 4e-18 Identities = 179/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | ||| ||||| |||||||| || ||||| ||||| || ||| Sbjct 103744520 GCCAAGCGTCACCGTAAAGTTCTCCGAGACAACATCCAGGGGATCACAAAGCCGGCGATC 103744579 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||| | || || || || ||| | | || | |||| || |||| Sbjct 103744580 CGACGGTTGGCGAGACGAGGAGGGGTGAAGAGGATAAGCGGCCTCATCTACGAGGAGACA 103744639 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | |||||||||||| ||| ||| ||| ||||| || ||| |||||| Sbjct 103744640 CGTGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCAGGGATGCCGTCACCTACACCGAG 103744699 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | ||||| || || | |||||| | || || || | || || || ||| Sbjct 103744700 CACGCCCGGAGGAAGACGGTTACTGCTATGGATGTTGTTTACGCCCTCAAGCGACAGGGC 103744759 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 103744760 CGAACCCTCTATGGATTTGG 103744779 Score = 102 bits (112), Expect = 1e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 16437 AGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496 ||||||| ||| | || || || |||||||| || ||||||||||| || ||||| | Sbjct 7247588 AGCGTCACAGCAAAGTCCTCCGTGACAACATCCAGGGCATCACCAAGCCGGCGATCCGCC 7247647 Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 | || || || || || ||||||||| | || || ||| | ||||| |||| | | Sbjct 7247648 GCCTTGCCCGCCGAGGCGGAGTCAAGAGGATCAGCGGGTTGATTTATGAGGAGACGAGGG 7247707 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 ||| |||| || |||||| ||| ||| ||| ||||| | || |||||||||| Sbjct 7247708 GGGTTCTGAAAATTTTCCTCGAGAACGTGATCTGCGATGCCGTGACGTACACCGAGCACG 7247767 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 | | | ||||| || || | ||||| || | || || ||||| Sbjct 7247768 CCAGGAGGAAGACGGTGACGGCGATGGACGTCATTTACGCTTTGAA 7247813 Score = 95.1 bits (104), Expect = 2e-15 Identities = 177/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | ||| ||||| |||||||| || ||||| |||| || ||| Sbjct 103315425 GCCAAGCGTCACCGTAAAGTTCTCCGAGACAACATCCAGGGGATCACAAAGCTGGCGATC 103315484 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||| | || || || || ||| | | || | |||| || |||| Sbjct 103315485 CGACGGTTGGCGAGACGAGGAGGGGTGAAGAGGATAAGCGGCCTCATCTACGAGGAGACA 103315544 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 ||||| || | |||||||||||| ||| ||| ||| ||||| || ||| |||| | Sbjct 103315545 CGTGACGTCCTTAAGATCTTCCTCGAGAACGTCATCAGGGATGCCGTCATCTACACCGCG 103315604 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||| | | ||||| || || | |||||| | || || || | ||||| ||||| Sbjct 103315605 CACACCCGGAGGAAGACGGTTACTGCTATGGATGTTGTTTACGCCATCAAACGGCAAGGT 103315664 Query 16673 CGTAAGATTTATGGTTTTGG 16692 | | | ||||| ||||| Sbjct 103315665 TGAACCCTCTATGGATTTGG 103315684 Score = 80.6 bits (88), Expect = 4e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||| ||||| || ||||| || ||||| || || ||||| || Sbjct 87506638 GACAACATCCAGGGGATCACGAAGCCGGCCATCCGCCGCCTGGCCCGGCGCGGTGGCGTG 87506579 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || || |||| || |||| || | || | |||||||||||| || Sbjct 87506578 AAGCGCATCAGCGGTCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGATCTTCCTCGAG 87506519 Query 16580 ACCGTTATC 16588 | ||| ||| Sbjct 87506518 AACGTCATC 87506510 >seq8 Length=131339754 Score = 82.4 bits (90), Expect = 1e-11 Identities = 180/267 (67%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||| ||||| || || Sbjct 128404347 GCGAAGCGCCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACTAAGCCGGCGAT 128404289 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || | | || || || ||| | || ||| || |||| || |||| Sbjct 128404288 CCGCCGCCTCGCGAGGAGGGGCGGGGTGAAGAGGATCAGCGGACTGATCTACGAGGAGAC 128404229 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || |||| || |||||| ||| ||| ||| ||||| | ||| ||||| Sbjct 128404228 GAGGGGGGTCCTGAAAATATTCCTCGAGAACGTGATCAGGGATGCGGTGACCTACACCGA 128404169 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | ||||| || || | |||||| | || || || | || | || || Sbjct 128404168 GCACGCGAGGAGGAAGACGGTGACGGCGATGGATGTGGTGTACGCGCTCAAGAGGCAGGG 128404109 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | ||||||| || || |||| Sbjct 128404108 CAGGACTCTTTATGGGTTCGGCGGTTA 128404082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064418491856