Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2 116 6e-22
seq1 113 7e-21
seq6 109 9e-20
seq5 104 4e-18
seq8 82.4 1e-11
>seq2
Length=84732013
Score = 116 bits (128), Expect = 6e-22
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| || ||||| ||||| || ||||| || ||||| || || ||||| ||
Sbjct 2818816 GACAACATCCAGGGGATCACGAAGCCGGCCATCCGCCGCCTGGCCCGGCGCGGTGGCGTG 2818757
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| || || || |||| || |||| || | || | |||||||||||| ||
Sbjct 2818756 AAGCGCATCAGCGGTCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGATCTTCCTCGAG 2818697
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| ||| || || || ||| || |||||||| | || ||||| |||||| ||
Sbjct 2818696 AACGTCATCAGGGACGCCGTCACCTACACGGAGCACGCCAGGCGCAAGACCGTCACCGCC 2818637
Query 16640 ATGGATATCGTCTATGC 16656
||||| ||||||| ||
Sbjct 2818636 ATGGACGTCGTCTACGC 2818620
>seq1
Length=132393784
Score = 113 bits (124), Expect = 7e-21
Identities = 144/197 (73%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| ||| |||| ||||| || ||||| || ||||| || || ||||| ||
Sbjct 58429360 GACAACATCCAGGGA-TCACGAAGCCGGCCATCCGCCGCCTGGCCCGGCGCGGTGGCGTG 58429418
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| || || || |||| || |||| || | || | |||||||||||| ||
Sbjct 58429419 AAGCGCATCAGCGGTCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGATCTTCCTCGAG 58429478
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| ||| || || || ||| || |||||||| | || ||||| |||||| ||
Sbjct 58429479 AACGTCATCAGGGACGCCGTCACCTACACGGAGCACGCCAGGCGCAAGACCGTCACCGCC 58429538
Query 16640 ATGGATATCGTCTATGC 16656
||||| ||||||| ||
Sbjct 58429539 ATGGACGTCGTCTACGC 58429555
>seq6
Length=78779235
Score = 109 bits (120), Expect = 9e-20
Identities = 180/260 (69%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| | || || || |||||||| || ||||||||||| || |||
Sbjct 66021163 GCAAAGCGCCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATC 66021104
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || || || || || || ||||||||| | || || ||| | || || || |
Sbjct 66021103 CGCCGCCTCGCCCGCCGAGGCGGAGTCAAGAGGATCAGCGGGTTGATTTACGAGGAAACG 66021044
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | |||||||| || |||||| ||| ||| |||| || || | || ||||||
Sbjct 66021043 AGGGGGGTTTTGAAAATTTTCCTCGAGAACGTGATCCGCGACGCCGTGACGTACACCGAG 66020984
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| | | ||||| || || | ||||| |||| || || ||||| | || |||
Sbjct 66020983 CACGCCAGGAGGAAGACGGTGACGGCGATGGACGTCGTTTACGCTTTGAAGAGGCAGGGC 66020924
Query 16673 CGTAAGATTTATGGTTTTGG 16692
| | | ||||| |||||
Sbjct 66020923 AGGACTTTGTATGGATTTGG 66020904
>seq5
Length=131469567
Score = 104 bits (114), Expect = 4e-18
Identities = 179/260 (69%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | | ||| ||||| |||||||| || ||||| ||||| || |||
Sbjct 103744520 GCCAAGCGTCACCGTAAAGTTCTCCGAGACAACATCCAGGGGATCACAAAGCCGGCGATC 103744579
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || |||| | || || || || ||| | | || | |||| || ||||
Sbjct 103744580 CGACGGTTGGCGAGACGAGGAGGGGTGAAGAGGATAAGCGGCCTCATCTACGAGGAGACA 103744639
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || | |||||||||||| ||| ||| ||| ||||| || ||| ||||||
Sbjct 103744640 CGTGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCAGGGATGCCGTCACCTACACCGAG 103744699
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| | ||||| || || | |||||| | || || || | || || || |||
Sbjct 103744700 CACGCCCGGAGGAAGACGGTTACTGCTATGGATGTTGTTTACGCCCTCAAGCGACAGGGC 103744759
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | | ||||| |||||
Sbjct 103744760 CGAACCCTCTATGGATTTGG 103744779
Score = 102 bits (112), Expect = 1e-17
Identities = 158/226 (70%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 16437 AGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496
||||||| ||| | || || || |||||||| || ||||||||||| || ||||| |
Sbjct 7247588 AGCGTCACAGCAAAGTCCTCCGTGACAACATCCAGGGCATCACCAAGCCGGCGATCCGCC 7247647
Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556
| || || || || || ||||||||| | || || ||| | ||||| |||| | |
Sbjct 7247648 GCCTTGCCCGCCGAGGCGGAGTCAAGAGGATCAGCGGGTTGATTTATGAGGAGACGAGGG 7247707
Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616
||| |||| || |||||| ||| ||| ||| ||||| | || ||||||||||
Sbjct 7247708 GGGTTCTGAAAATTTTCCTCGAGAACGTGATCTGCGATGCCGTGACGTACACCGAGCACG 7247767
Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662
| | | ||||| || || | ||||| || | || || |||||
Sbjct 7247768 CCAGGAGGAAGACGGTGACGGCGATGGACGTCATTTACGCTTTGAA 7247813
Score = 95.1 bits (104), Expect = 2e-15
Identities = 177/260 (68%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | | ||| ||||| |||||||| || ||||| |||| || |||
Sbjct 103315425 GCCAAGCGTCACCGTAAAGTTCTCCGAGACAACATCCAGGGGATCACAAAGCTGGCGATC 103315484
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || |||| | || || || || ||| | | || | |||| || ||||
Sbjct 103315485 CGACGGTTGGCGAGACGAGGAGGGGTGAAGAGGATAAGCGGCCTCATCTACGAGGAGACA 103315544
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
||||| || | |||||||||||| ||| ||| ||| ||||| || ||| |||| |
Sbjct 103315545 CGTGACGTCCTTAAGATCTTCCTCGAGAACGTCATCAGGGATGCCGTCATCTACACCGCG 103315604
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||| | | ||||| || || | |||||| | || || || | ||||| |||||
Sbjct 103315605 CACACCCGGAGGAAGACGGTTACTGCTATGGATGTTGTTTACGCCATCAAACGGCAAGGT 103315664
Query 16673 CGTAAGATTTATGGTTTTGG 16692
| | | ||||| |||||
Sbjct 103315665 TGAACCCTCTATGGATTTGG 103315684
Score = 80.6 bits (88), Expect = 4e-11
Identities = 95/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| || ||||| ||||| || ||||| || ||||| || || ||||| ||
Sbjct 87506638 GACAACATCCAGGGGATCACGAAGCCGGCCATCCGCCGCCTGGCCCGGCGCGGTGGCGTG 87506579
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| || || || |||| || |||| || | || | |||||||||||| ||
Sbjct 87506578 AAGCGCATCAGCGGTCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGATCTTCCTCGAG 87506519
Query 16580 ACCGTTATC 16588
| ||| |||
Sbjct 87506518 AACGTCATC 87506510
>seq8
Length=131339754
Score = 82.4 bits (90), Expect = 1e-11
Identities = 180/267 (67%), Gaps = 2/267 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| | || || || || |||||||| || ||||| ||||| || ||
Sbjct 128404347 GCGAAGCGCCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACTAAGCCGGCGAT 128404289
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || || || | | || || || ||| | || ||| || |||| || ||||
Sbjct 128404288 CCGCCGCCTCGCGAGGAGGGGCGGGGTGAAGAGGATCAGCGGACTGATCTACGAGGAGAC 128404229
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
| | || |||| || |||||| ||| ||| ||| ||||| | ||| |||||
Sbjct 128404228 GAGGGGGGTCCTGAAAATATTCCTCGAGAACGTGATCAGGGATGCGGTGACCTACACCGA 128404169
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| | | ||||| || || | |||||| | || || || | || | || ||
Sbjct 128404168 GCACGCGAGGAGGAAGACGGTGACGGCGATGGATGTGGTGTACGCGCTCAAGAGGCAGGG 128404109
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698
| | | ||||||| || || ||||
Sbjct 128404108 CAGGACTCTTTATGGGTTCGGCGGTTA 128404082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79064418491856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |