Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 158 2e-33 seq4 131 2e-25 seq3174 98.7 1e-15 seq831 98.7 1e-15 seq10 98.7 1e-15 >seq2 Length=84732013 Score = 158 bits (174), Expect = 2e-33 Identities = 439/664 (66%), Gaps = 16/664 (2%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || ||||| || || || | || ||||| || || || || || | ||| || || Sbjct 24868965 TTCTGGTAATCCCCTACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAAC 24868906 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| |||||||||| || | | | ||| | |||| || ||||| | | | Sbjct 24868905 TCCATCCAATCAAACGGGTTCGAAGCTCCATACAACTTTTCAATCCCCAAAGCCCCCAAC 24868846 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 || | || || |||||||| |||||| |||||| || | |||||| || | | Sbjct 24868845 AAGCGGTCAGCCACGAATTCAATATATTCACTCATCAGATCCCCATTCATCCCGACCAAA 24868786 Query 33193 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 ||| || ||||| |||| || ||| || |||| || || ||||| | | || Sbjct 24868785 GCAACCGGCAGAGCATCGCA--AACAAACTCCCGTTCGATATCAACAGCATCCTTCACAA 24868728 Query 33251 TAGATCTAACGGTTTCTTCACTCGG-TGGATG--CAATAAATGTTTAAACATCAAACATG 33307 | | || | ||||| ||| | | | || || | | | ||| ||| || | Sbjct 24868727 TCCCCTTCACACTCTCTTCGCTCAGCTTGTTGTTCAGCAGAGAAT---ACAACAAGCAAG 24868671 Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 |||||||||| || || || ||||||| | || || ||||| ||||| || | || | Sbjct 24868670 CGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCG 24868611 Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGATT 33426 |||| | || |||||||||||||| || |||| | | || | | || || ||||| || Sbjct 24868610 GCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCA-CAAAAGCTCCCGGAGAAGAAAATC 24868552 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT--GTCATGTATCC 33484 ||||| || |||||| || || | |||||| | || | | || | ||| |||| Sbjct 24868551 CCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTGAGCCATCGATCC 24868494 Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544 |||| | ||||| ||||||||||| || ||||| || || || ||||| | ||| | Sbjct 24868493 ACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAA 24868434 Query 33545 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604 | | | ||||||| || || | || | |||| | ||| ||||| || | Sbjct 24868433 GGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACATCTCGG 24868374 Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664 | || ||||| || ||||| ||||| || |||||||| || ||||||| | ||| | Sbjct 24868373 AGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGGA 24868314 Query 33665 CTTC 33668 | || Sbjct 24868313 CCTC 24868310 Score = 158 bits (174), Expect = 2e-33 Identities = 439/664 (66%), Gaps = 16/664 (2%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || ||||| || || || | || ||||| || || || || || | ||| || || Sbjct 26602661 TTCTGGTAATCCCCTACCCTCTTCTCGAAGAAGTTCGTCTTCCCCTGCAACGAAATCAAC 26602720 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| |||||||||| || | | | ||| | |||| || ||||| | | | Sbjct 26602721 TCCATCCAATCAAACGGGTTCGAAGCTCCATACAACTTTTCAATCCCCAAAGCCCCCAAC 26602780 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 || | || || |||||||| |||||| |||||| || | |||||| || | | Sbjct 26602781 AAGCGGTCAGCCACGAATTCAATATATTCACTCATCAGATCCCCATTCATCCCGACCAAA 26602840 Query 33193 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 ||| || ||||| |||| || ||| || |||| || || ||||| | | || Sbjct 26602841 GCAACCGGCAGAGCATCGCA--AACAAACTCCCGTTCGATATCAACAGCATCCTTCACAA 26602898 Query 33251 TAGATCTAACGGTTTCTTCACTCGG-TGGATG--CAATAAATGTTTAAACATCAAACATG 33307 | | || | ||||| ||| | | | || || | | | ||| ||| || | Sbjct 26602899 TCCCCTTCACACTCTCTTCGCTCAGCTTGTTGTTCAGCAGAGAAT---ACAACAAGCAAG 26602955 Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 |||||||||| || || || ||||||| | || || ||||| ||||| || | || | Sbjct 26602956 CGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAAAGGTTAACCCCG 26603015 Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAAGATT 33426 |||| | || |||||||||||||| || |||| | | || | | || || ||||| || Sbjct 26603016 GCATCAATCCGCGCTTTTTAAGCCAGAAAATGGCA-CAAAAGCTCCCGGAGAAGAAAATC 26603074 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT--GTCATGTATCC 33484 ||||| || |||||| || || | |||||| | || | | || | ||| |||| Sbjct 26603075 CCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTGAGCCATCGATCC 26603132 Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544 |||| | ||||| ||||||||||| || ||||| || || || ||||| | ||| | Sbjct 26603133 ACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGATGGCGTGAAAAA 26603192 Query 33545 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604 | | | ||||||| || || | || | |||| | ||| ||||| || | Sbjct 26603193 GGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCGAGTACATCTCGG 26603252 Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664 | || ||||| || ||||| ||||| || |||||||| || ||||||| | ||| | Sbjct 26603253 AGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGGA 26603312 Query 33665 CTTC 33668 | || Sbjct 26603313 CCTC 26603316 >seq4 Length=146560859 Score = 131 bits (144), Expect = 2e-25 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 63604 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63663 ||||| ||| || ||||||||||||||||||||||| || |||||||| | || | Sbjct 9258805 GACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACA 9258746 Query 63664 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACA 63722 ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || || Sbjct 9258745 TTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACT 9258687 Query 63723 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 63782 | ||| | |||||| ||||||||||| || | ||| | | ||| || | |||||| Sbjct 9258686 CTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATAGGAT 9258627 Query 63783 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 | || | |||||| |||||||| |||| || |||||||| || ||||| || Sbjct 9258626 CTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571 >seq3174 Length=2385 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 1318 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1377 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63718 || | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 1378 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1436 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63754 || | ||| | |||||| ||||||||||| || || Sbjct 1437 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1472 >seq831 Length=51122 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 19017 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 19076 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63718 || | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 19077 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 19135 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63754 || | ||| | |||||| ||||||||||| || || Sbjct 19136 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 19171 >seq10 Length=73452336 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 1168067 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1168008 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 63718 || | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 1168007 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1167949 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63754 || | ||| | |||||| ||||||||||| || || Sbjct 1167948 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1167913 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 24507686 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 24507745 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63718 || | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 24507746 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 24507804 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63754 || | ||| | |||||| ||||||||||| || || Sbjct 24507805 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 24507840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622855377582720