Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 100 7e-16 seq2 100 7e-16 >seq4 Length=146560859 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| |||||||| || | |||||| || ||| | |||||| |||| | Sbjct 9258922 ATGAAAGATGATAGTATCGAGGGCATATATGACACTCTCAAGGAGTGTGCTGTTATAAGC 9258981 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATT 363741 || ||| || ||||||||||| || | |||||| |||||||| | |||||| ||| Sbjct 9258982 AAATCTGCTGGAGGAATTGGTGTTTCTGTTCACAATATTCGTGCAATGGGCAGTTATATT 9259041 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 || || ||| ||| || ||||| | || || ||| | | |||||| | | ||| Sbjct 9259042 CGTGGAACAAACGGAACTTCTAATGGTATTGTCCCAATGTTAAGGGTGTTTAATGACACT 9259101 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || | || || || || || ||||| ||| | || || Sbjct 9259102 GCTCGCTATGTTGATCAAGGGGGAGGCAAGAGGAAGGG 9259139 >seq2 Length=84732013 Score = 100 bits (110), Expect = 7e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT-GAACAATGAACGTTCATTCGCGGAACGTCT 22496 || ||||| || ||||||||||| ||||| || | | | || ||||| || | | Sbjct 24868469 AAGAAGGCCGAGTGGGCGCTGAAGTGGATCGATGGCTCAGAG-TCTTTCGCCGAGAGATT 24868527 Query 22497 TATTGCATTTGCTGTGGTTGAAGGCATTTTCTT-TTCTGGAGCATTTTGTGCAATCTTTT 22555 || || |||||| || ||||| |||||||| | | ||||| |||||||| || || | Sbjct 24868528 GATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGC-TTTTGTGCCATTTTCT 24868586 Query 22556 GGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAG 22615 |||| ||||| || | | | |||||||| |||| |||||||| ||| | || |||| Sbjct 24868587 GGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAG 24868646 Query 22616 ATGAGGGTCTTCATACCGATTTTGCGTG 22643 | || || || ||| |||||| || || Sbjct 24868647 ACGAAGGCCTCCATTGCGATTTCGCTTG 24868674 Score = 100 bits (110), Expect = 7e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT-GAACAATGAACGTTCATTCGCGGAACGTCT 22496 || ||||| || ||||||||||| ||||| || | | | || ||||| || | | Sbjct 26603157 AAGAAGGCCGAGTGGGCGCTGAAGTGGATCGATGGCTCAGAG-TCTTTCGCCGAGAGATT 26603099 Query 22497 TATTGCATTTGCTGTGGTTGAAGGCATTTTCTT-TTCTGGAGCATTTTGTGCAATCTTTT 22555 || || |||||| || ||||| |||||||| | | ||||| |||||||| || || | Sbjct 26603098 GATCGCTTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGC-TTTTGTGCCATTTTCT 26603040 Query 22556 GGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAG 22615 |||| ||||| || | | | |||||||| |||| |||||||| ||| | || |||| Sbjct 26603039 GGCTTAAAAAGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAG 26602980 Query 22616 ATGAGGGTCTTCATACCGATTTTGCGTG 22643 | || || || ||| |||||| || || Sbjct 26602979 ACGAAGGCCTCCATTGCGATTTCGCTTG 26602952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303156682821344