Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 seq6 86.0 5e-12 >seq3 Length=113259003 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || |||| || || | || || | ||||| ||| | | Sbjct 21885716 ATGCAGATTTTTGTCAAGACCCTAACCGGCAAGACCATCACTTTGGAAGTGGAGAGCTCC 21885657 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| || || || || || || || Sbjct 21885656 GACACCATCGACAATGTGAAAGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 21885597 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| | ||||||||| || || |||| | | | | || || |||||| Sbjct 21885596 CAGAGGTTGATTTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCTGACTATAAC 21885537 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || |||| | ||| | || |||| ||||| Sbjct 21885536 ATCCAGAAGGAGTCCACCCTTCACCTTGTGCTGAGGCTGAGGGGAGG 21885490 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || ||| | ||||| ||| | Sbjct 21885944 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACTATCACCCTTGAAGTGGAGAGCTCA 21885885 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| || ||||| || || || || Sbjct 21885884 GACACCATCGACAATGTAAAAGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAG 21885825 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| | |||||||| | || |||| | | | | | || || ||| Sbjct 21885824 CAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAGGATGGCCGTACCCTTGCTGACTACAAC 21885765 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||||| ||| | || |||| ||||| Sbjct 21885764 ATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCAGGCTGAGGGGAGG 21885718 >seq6 Length=78779235 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| |||||| |||| || || | || || |||| || || || Sbjct 3702854 ATGCAGATCTTTGTGAAAACACTAACCGGCAAGACAATCACACTCGAGGTTGAATCCTCT 3702913 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| ||||| || |||||||| || Sbjct 3702914 GACACCATCGACAATGTTAAAGCAAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAG 3702973 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||||| || || || |||| | | | | | ||||| ||| Sbjct 3702974 CAACGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCGGATTACAAC 3703033 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || ||||| Sbjct 3703034 ATCCAAAAGGAGTCTAC 3703050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429874211747760