Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 seq8 116 3e-21 seq6 116 3e-21 seq5 84.2 2e-11 >seq3 Length=113259003 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| || || ||||||||||| || ||||||||||| || Sbjct 21885033 CCCACCACGAAGACGAAGCACCAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCCGC 21885092 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | ||||||| || ||||| ||| | || |||| |||||||||| ||| Sbjct 21885093 GAGGGTACGTCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGTTGGTCCGGAGG 21885152 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| || | | |||||| | | | | |||||| | |||| Sbjct 21885153 GATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATCGTGTCGGAGCTCTCCAC 21885212 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||| || || || |||||||||||||| Sbjct 21885213 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 21885260 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| || | || || ||||||||||| || ||||| ||||| || Sbjct 21885490 CCTCCCCTCAGCCTCAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCG 21885549 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||| ||| |||| | || ||| ||||| || Sbjct 21885550 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGG 21885609 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || |||||| ||||| | | | | |||||| | |||| Sbjct 21885610 ATTCCCTCCTTGTCCTGGATCTTTGCT--TTCACATTGTCGATGGTGTCGGAGCTCTCCA 21885667 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||| || ||||| || || ||||||||||||||||| Sbjct 21885668 CTTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCAT 21885716 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | ||||| || |||| ||| || || |||||||| || ||||||||||| || Sbjct 21885718 CCTCCCCTCAGCCTGAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 21885777 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | |||||||| || ||||| ||| |||| |||| ||| ||||| || Sbjct 21885778 AGGGTACGGCCATCCTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGG 21885837 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| || || | | | | ||||| | |||| Sbjct 21885838 ATGCCCTCCTTGTCCTGAATCTTGGCT--TTTACATTGTCGATGGTGTCTGAGCTCTCCA 21885895 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||| || || || || || || ||||||||||||||||| Sbjct 21885896 CTTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 21885944 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||| || || |||| ||| | ||||| | || Sbjct 21885286 TGGAGGGTGGACTCCTTCTGAATGTTATAATCCGCCAACGTTCGCCCATCCTCAAGCTGC 21885345 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | ||||||| ||| ||||| || | ||||| ||||| || ||| Sbjct 21885346 TTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTT 21885405 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | | |||||| | |||| ||||| |||||||| || |||| Sbjct 21885406 GCT--TTCACATTGTCGATGGTGTCGGAGCTCTCCACTTCCAAAGTGATGGTCTTGCCGG 21885463 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || |||||||||||||| Sbjct 21885464 TTAGGGTCTTAACAAAAATCTGCAT 21885488 >seq8 Length=131339754 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || || | ||| || |||||||||||||| |||||||||||||| Sbjct 3136223 CCTCCACGGAGCCTTAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCG 3136282 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || || || ||| ||||||||| ||| ||||| || Sbjct 3136283 AGAGTACGACCATCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGA 3136342 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| |||| ||| || | | | | ||||| | ||| Sbjct 3136343 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATTGTGTCAGAGCTCTCAACC 3136402 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||||| ||||||| || ||||||||||||||||| Sbjct 3136403 TCAAGCGTGATGGTTTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 3136449 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| ||| | || || | ||| || || ||||||||||| ||||| ||||| || Sbjct 3136451 CCACCTCTTAGACGAAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTATAGTCAGCA 3136510 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || || || ||| |||| |||| ||| |||||| || Sbjct 3136511 AGGGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGGTCCGGGGGG 3136570 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| |||| ||| || | | | | |||||| | ||| Sbjct 3136571 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATTGTGTCGGAGCTCTCGACC 3136630 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||||||||| |||| || ||||||||||||||||| Sbjct 3136631 TCAAGGGTGATGGTTTTTCCTGTCAAGGTCTTGACAAAAATCTGCAT 3136677 Score = 109 bits (120), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | || || || |||||||| || |||||||||||||| Sbjct 122668959 CCTCCGCGGAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 122669018 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | ||||||| | || || ||||| |||| || ||||| |||||| || Sbjct 122669019 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCCGCGAAAATGAGGCGCTGCTGGTCCGGGGGG 122669078 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | ||||| || ||| Sbjct 122669079 ATCCCCTCCTTGTCTTGGATCTTGGC--CTTGACATTGTCGATCGTGTCCGAGGACTCGA 122669136 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||||| || ||||| || |||||||| || |||||||| ||| Sbjct 122669137 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCATGTTG 122669189 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || |||| || || | || || |||||||||||||| |||||||| || || Sbjct 3135995 CCTCCACGAAGCCGAAGAACGAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCTGCT 3136054 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || |||||| |||| |||| ||| ||||| || Sbjct 3136055 AGGGTGCGGCCGTCCTCAAGCTGCTTCCCCGCAAAAATGAGCCTCTGCTGGTCTGGGGGG 3136114 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| ||||| ||| || || | | | | ||||| | ||| Sbjct 3136115 ATACCCTCTTTGTCCTGAATTTTGGCT--TTGACATTGTCGATTGTGTCAGAGCTCTCGA 3136172 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| || ||||| || || || || |||||||| Sbjct 3136173 CCTCAAGGGTGATGGTTTTGCCAGTCAGTGTCTTAACGAAGATCTGCAT 3136221 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||| || | || | | ||||| | ||| Sbjct 3136703 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGGCCATCCTCGAGTTGC 3136762 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || |||| |||| ||| ||||| || | |||||| ||||| || || Sbjct 3136763 TTTCCTGCGAAAATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTG 3136822 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | | |||||| | |||| || | |||||| || ||||| | Sbjct 3136823 GCT--TTGACATTGTCAATAGTGTCTGAGCTCTCCACCTCAAGGGTGATAGTCTTTCCTG 3136880 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTGTAGC 16943 | || || || ||||| ||||||| | |||||| Sbjct 3136881 TAAGTGTCTTCACAAAGATCTGCA-TCTGTAGC 3136912 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | || || || ||||||||||| |||||||| || || Sbjct 3135767 CCACCACGAAGCCTGAGCACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCTGCA 3135826 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | ||||||| | || || || || | || |||| ||| || ||| || Sbjct 3135827 AGGGTTCGGCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGGGGG 3135886 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| || || || | ||| || | | | | || || | |||| Sbjct 3135887 ATGCCCTCCTTATCCTGTATCTTGGCCTTGACATTGTCGATTGTATCCGAGCTCTCCACC 3135946 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| ||||||||||| ||||| || || || ||||| ||||| Sbjct 3135947 TCCAAGGTAATGGTTTTTCCTGTCAGGGTCTTAACGAAAATTTGCAT 3135993 >seq6 Length=78779235 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || |||||||| |||| || || || |||||||| || |||||||| || || Sbjct 3703765 CCCTCCACGAAGCCTCAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCAGC 3703706 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | ||||| | |||||| || ||| | || |||| ||| ||||| || Sbjct 3703705 GAGAGTCCGGCCATCCTCGAGTTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCAGGGGG 3703646 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| || | | ||| || | | | | ||||| | ||| Sbjct 3703645 GATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGAC 3703586 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||| || |||||||| |||||||| |||||||||||| Sbjct 3703585 CTCCAACGTGATGGTCTTGCCGGTCAGGGTTTTGACGAAAATCTGCATT 3703537 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || || | ||| || ||||| ||||| || || ||||| || ||| Sbjct 3703536 CCTCCACGCAGCCTGAGGACAAGATGAAGAGTGGATTCCTTCTGGATATTGTAATCAGCC 3703477 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| | |||||| || || | ||||||| || |||||| ||| Sbjct 3703476 AGAGTCCGGCCGTCCTCGAGTTGTTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGAGGA 3703417 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||| ||| | ||| Sbjct 3703416 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTGACATTATCAATAGTATCGGAGCTCTCGA 3703359 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||||||||||| || || ||||||||||| ||||| Sbjct 3703358 CCTCCAGAGTGATGGTTTTTCCGGTTAGGGTCTTGACAAAAATTTGCAT 3703310 >seq5 Length=131469567 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| ||||||| || | ||| || || ||||| || ||||||||||| || ||| Sbjct 77212194 CCTCCTCTAAGCCTCAAAACTAGATGAAGAGTTGACTCTTTCTGTATGTTGTAATCAGCC 77212135 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||||||| || || ||| |||| |||| ||| || || ||| Sbjct 77212134 AGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAGCCTCTGCTGATCAGGAGGT 77212075 Query 16829 ACGCCCTCTTTGTC 16842 | |||||||| || Sbjct 77212074 ATACCCTCTTTATC 77212061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405029782778080