Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 seq4 131 2e-25 seq3174 98.7 1e-15 seq831 98.7 1e-15 seq10 98.7 1e-15 >seq2 Length=84732013 Score = 143 bits (158), Expect = 3e-29 Identities = 260/376 (69%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || ||||||||||| || || || ||||||| | || | ||||| |||| Sbjct 24868682 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 24868623 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 | || | || ||||| | || |||||||||||||| || |||| | |||| | | || Sbjct 24868622 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGG-CACAAAAGCTCCCG 24868564 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 32830 || |||||||| ||||| || ||||| || || | |||||| | || | | || Sbjct 24868563 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTG 24868506 Query 32831 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 | ||| |||||||| | ||||| ||||||||||| || ||||| || ||||| | Sbjct 24868505 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 24868446 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | || | ||| || | | ||||||| || || | || | || | | ||| Sbjct 24868445 TGGCGTGAAAAAGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCG 24868386 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 ||||| || || || ||||| || ||||| || || || ||||||||| || |||| Sbjct 24868385 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCT 24868326 Query 33010 CGGTAATCTGTACTTC 33025 ||| | ||| || || Sbjct 24868325 CGGCGACCTGGACCTC 24868310 Score = 143 bits (158), Expect = 3e-29 Identities = 260/376 (69%), Gaps = 6/376 (2%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || ||||||||||| || || || ||||||| | || | ||||| |||| Sbjct 26602944 ACAACAAGCAAGCGAAATCGCAATGGAGGCCTTCGTCTCGAGATATGAGCTCGTTTGAAA 26603003 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 | || | || ||||| | || |||||||||||||| || |||| | |||| | | || Sbjct 26603004 AGGTTAACCCCGGCATCAATCCGCGCTTTTTAAGCCAGAAAATGG-CACAAAAGCTCCCG 26603062 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 32830 || |||||||| ||||| || ||||| || || | |||||| | || | | || Sbjct 26603063 GAGAAGAAAATCCCTTCGACGCAAGCAAAAGCGATCAATCTCTCGGCGAAA--GACTCTG 26603120 Query 32831 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 | ||| |||||||| | ||||| ||||||||||| || ||||| || ||||| | Sbjct 26603121 AGCCATCGATCCACTTCAGCGCCCACTCGGCCTTCTTGGCGACGCAAGGGATGGTCTCGA 26603180 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | || | ||| || | | ||||||| || || | || | || | | ||| Sbjct 26603181 TGGCGTGAAAAAGGCGGCTCTTTTCATCGGAGTCCTTGATGTAGGATTCGAGGAGAAGCG 26603240 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 ||||| || || || ||||| || ||||| || || || ||||||||| || |||| Sbjct 26603241 AGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCT 26603300 Query 33010 CGGTAATCTGTACTTC 33025 ||| | ||| || || Sbjct 26603301 CGGCGACCTGGACCTC 26603316 >seq4 Length=146560859 Score = 131 bits (144), Expect = 2e-25 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 63459 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAA 63518 ||||| ||| || ||||||||||||||||||||||| || |||||||| | || | Sbjct 9258805 GACGAGGAGTGCCAGCATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGTGACA 9258746 Query 63519 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACA 63577 ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || || Sbjct 9258745 TTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGCAACT 9258687 Query 63578 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 63637 | ||| | |||||| ||||||||||| || | ||| | | ||| || | |||||| Sbjct 9258686 CTCATCAGCATGTGTTGAGGTCTTTCTACAACCTTTTCAGAGACTTTTAAGAGATAGGAT 9258627 Query 63638 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 | || | |||||| |||||||| |||| || |||||||| || ||||| || Sbjct 9258626 CTCTCAAGAGTTTTGAAACCAAAGTAGTCATAATCAAAGTCTCTATCATAAATTAT 9258571 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| | || | ||| |||| |||| | || || |||||||| | |||||| Sbjct 9259125 TCCCCCTTGATCAACATAGCGAGCAGTGTCATTAAACACCCTTAACATTGGGACAATACC 9259066 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| || || || || || || ||||| || || | ||||||||||| || || Sbjct 9259065 ATTAGAAGTTCCGTTTGTTCCACGAATATAACTGCCCATTGCACGAATATTGTGAACAGA 9259006 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| || | || || || | || ||||| || Sbjct 9259005 AACACCAATTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTGAGAGTGTCATATAT 9258946 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 |||||| ||||||||||| |||| || || || ||||| Sbjct 9258945 GCCCTCGATACTATCATCTTTCATACAAATAAGGAAGCAGCT 9258904 >seq3174 Length=2385 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 1318 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1377 Query 63515 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63573 || | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 1378 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1436 Query 63574 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63609 || | ||| | |||||| ||||||||||| || || Sbjct 1437 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1472 >seq831 Length=51122 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 19017 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 19076 Query 63515 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63573 || | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 19077 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 19135 Query 63574 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63609 || | ||| | |||||| ||||||||||| || || Sbjct 19136 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 19171 >seq10 Length=73452336 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 1168067 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 1168008 Query 63515 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 63573 || | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 1168007 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 1167949 Query 63574 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63609 || | ||| | |||||| ||||||||||| || || Sbjct 1167948 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 1167913 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514 ||| ||||| ||| || |||||||||||||||||||||| || |||||||| | Sbjct 24507686 TGGGGACGAGGAGTGCCAACATTAAATAAGGTAGGAGAAGCATGTGTAAACCACCGCTGT 24507745 Query 63515 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGC 63573 || | ||||| ||| || | | ||| || || ||||| | ||| |||||||| || || Sbjct 24507746 GACATTAGATGGTATGTTTTGACAGCAGAATCAATATCTTCCTTG-TGAATTCCAACAGC 24507804 Query 63574 GACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63609 || | ||| | |||||| ||||||||||| || || Sbjct 24507805 AACTCTCATCAGCATGTGTTGAGGTCTTTCTACAAT 24507840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633538602643200