Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq8 150 2e-31
seq6 116 3e-21
seq3 114 1e-20
>seq8
Length=131339754
Score = 150 bits (166), Expect = 2e-31
Identities = 172/229 (75%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||||||| ||| ||||||| | || || ||| |||
Sbjct 3136449 ATGCAGATTTTTGTCAAGACCTTGACCGGCAAAACCATCACGCTTGAGGTTGAGAGCTCT 3136390
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| || || ||| |||||| ||||| || || ||||| || ||||
Sbjct 3136389 GACACAATCGA--CAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACC 3136332
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||| || ||||||||||||| || || | || |||| ||| ||| | | ||| ||||
Sbjct 3136331 AGCAGAGGCTTATTTTTGCCGGGAAGCAGCTTGAGGATGGTCGTACTCTCGCCGACTACA 3136272
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || ||||| || ||||| || ||| | ||||||||||| | |||||
Sbjct 3136271 ACATCCAAAAGGAGTCCACCCTCCATCTTGTGCTAAGGCTCCGTGGAGG 3136223
>seq6
Length=78779235
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| | ||||| ||| ||||||| | || || ||| ||
Sbjct 3703310 ATGCAAATTTTTGTCAAGACCCTAACCGGAAAAACCATCACTCTGGAGGTCGAGAGCTCC 3703369
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| ||||| || | ||| || ||| ||||| || || ||||| || |||||
Sbjct 3703370 GATACTATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAG 3703429
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || |||| || || || |||||| | || || | || ||| ||| |||||||||
Sbjct 3703430 CAAAGGCTTATCTTCGCTGGAAAACAACTCGAGGACGGCCGGACTCTGGCTGATTACAAT 3703489
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || || |||||||| || ||| | || || ||||| | |||||||
Sbjct 3703490 ATCCAGAAGGAATCCACTCTTCATCTTGTCCTCAGGCTGCGTGGAGGAA 3703538
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| ||||| ||||| || || | ||||| | || |||||| |||
Sbjct 3703766 ATGCAGATATTTGTCAAGACCTTGACGGGGAAGACGATCACCTTGGAGGTGGAGAGCTCT 3703825
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| ||||| |||| | || || | || || || || |||||||| || ||
Sbjct 3703826 GACACGATCGACAACGTCA---AGGCGAAGATACAG-GATAAGGAGGGGATTCCGCCGGA 3703881
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||| || | || || || || || || | ||||||| | ||| | | |||||
Sbjct 3703882 TCAGCAGAGGTTGATCTTCGCAGGGAAGCAGCTTGAAGATGGGAGGACTCTTGCTGATTA 3703941
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||| || || || || || || | |||||
Sbjct 3703942 CAATATTCAGAAGGAGTCTACTCTCCACCTTGTGCT 3703977
>seq3
Length=113259003
Score = 114 bits (126), Expect = 1e-20
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | ||||| || ||||||| | ||||||||| ||
Sbjct 21885716 ATGCAGATTTTTGTCAAGACCCTAACCGGCAAGACCATCACTTTGGAAGTGGAGAGCTCC 21885657
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || ||||||| | || ||||| || || || || || |||
Sbjct 21885656 GACACCATCGA--CAATGTGAAAGCAAAGATCCAG-GACAAGGAGGGAATCCCCCCAGAC 21885600
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| || | |||||||||||||| || | || |||| ||||| | | || ||
Sbjct 21885599 CAGCAGAGGTTGATTTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCTGACTAT 21885540
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || ||||| || || | ||||| ||||| || |||||
Sbjct 21885539 AACATCCAGAAGGAGTCCACCCTTCACCTTGTGCTGAGGCTGAGGGGAGG 21885490
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/207 (71%), Gaps = 8/207 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | || || || ||||||| |||| || ||| |||
Sbjct 21886400 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGAGTTCT 21886341
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| || || |||| |||| |||| || ||||| || ||||| || |||||
Sbjct 21886340 GACACCATTGATAATGTCA---AAGCCAAAATCCAG-GACAAGGAGGGGATCCCCCCTGA 21886285
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| || | | || |||||||||||||| | || || | || || | | |||||
Sbjct 21886284 CCAGCAAAGACTGATCTTTGCCGGCAAACAGCTTGAGGACGGCCGTACCCTCGCTGATTA 21886225
Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201
|||||| ||||| || ||||| || ||
Sbjct 21886224 CAATATCCAAAAGGAGTCCACACTCCA 21886198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433265724266480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |