Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq8 150 2e-31 seq6 116 3e-21 seq3 114 1e-20 >seq8 Length=131339754 Score = 150 bits (166), Expect = 2e-31 Identities = 172/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| ||| ||||||| | || || ||| ||| Sbjct 3136449 ATGCAGATTTTTGTCAAGACCTTGACCGGCAAAACCATCACGCTTGAGGTTGAGAGCTCT 3136390 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| |||||| ||||| || || ||||| || |||| Sbjct 3136389 GACACAATCGA--CAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACC 3136332 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || ||||||||||||| || || | || |||| ||| ||| | | ||| |||| Sbjct 3136331 AGCAGAGGCTTATTTTTGCCGGGAAGCAGCTTGAGGATGGTCGTACTCTCGCCGACTACA 3136272 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| || ||||| || ||| | ||||||||||| | ||||| Sbjct 3136271 ACATCCAAAAGGAGTCCACCCTCCATCTTGTGCTAAGGCTCCGTGGAGG 3136223 >seq6 Length=78779235 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | ||||| ||| ||||||| | || || ||| || Sbjct 3703310 ATGCAAATTTTTGTCAAGACCCTAACCGGAAAAACCATCACTCTGGAGGTCGAGAGCTCC 3703369 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | ||| || ||| ||||| || || ||||| || ||||| Sbjct 3703370 GATACTATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCGGACCAG 3703429 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| || || || |||||| | || || | || ||| ||| ||||||||| Sbjct 3703430 CAAAGGCTTATCTTCGCTGGAAAACAACTCGAGGACGGCCGGACTCTGGCTGATTACAAT 3703489 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || |||||||| || ||| | || || ||||| | ||||||| Sbjct 3703490 ATCCAGAAGGAATCCACTCTTCATCTTGTCCTCAGGCTGCGTGGAGGAA 3703538 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| || || | ||||| | || |||||| ||| Sbjct 3703766 ATGCAGATATTTGTCAAGACCTTGACGGGGAAGACGATCACCTTGGAGGTGGAGAGCTCT 3703825 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | || || | || || || || |||||||| || || Sbjct 3703826 GACACGATCGACAACGTCA---AGGCGAAGATACAG-GATAAGGAGGGGATTCCGCCGGA 3703881 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | || || || || || || | ||||||| | ||| | | ||||| Sbjct 3703882 TCAGCAGAGGTTGATCTTCGCAGGGAAGCAGCTTGAAGATGGGAGGACTCTTGCTGATTA 3703941 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| || || || || || || | ||||| Sbjct 3703942 CAATATTCAGAAGGAGTCTACTCTCCACCTTGTGCT 3703977 >seq3 Length=113259003 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| | ||||||||| || Sbjct 21885716 ATGCAGATTTTTGTCAAGACCCTAACCGGCAAGACCATCACTTTGGAAGTGGAGAGCTCC 21885657 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||||||| | || ||||| || || || || || ||| Sbjct 21885656 GACACCATCGA--CAATGTGAAAGCAAAGATCCAG-GACAAGGAGGGAATCCCCCCAGAC 21885600 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | |||||||||||||| || | || |||| ||||| | | || || Sbjct 21885599 CAGCAGAGGTTGATTTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCTGACTAT 21885540 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| || || | ||||| ||||| || ||||| Sbjct 21885539 AACATCCAGAAGGAGTCCACCCTTCACCTTGTGCTGAGGCTGAGGGGAGG 21885490 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || ||||||| |||| || ||| ||| Sbjct 21886400 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACTCTCGAGGTCGAGAGTTCT 21886341 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| |||| || ||||| || ||||| || ||||| Sbjct 21886340 GACACCATTGATAATGTCA---AAGCCAAAATCCAG-GACAAGGAGGGGATCCCCCCTGA 21886285 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || | | || |||||||||||||| | || || | || || | | ||||| Sbjct 21886284 CCAGCAAAGACTGATCTTTGCCGGCAAACAGCTTGAGGACGGCCGTACCCTCGCTGATTA 21886225 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 |||||| ||||| || ||||| || || Sbjct 21886224 CAATATCCAAAAGGAGTCCACACTCCA 21886198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433265724266480