Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 4e-13 seq3 82.4 5e-11 >seq5 Length=131469567 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||||||| ||||| | || ||||| || || |||||||| || ||| | ||| Sbjct 77212061 GATAAAGAGGGTATACCTCCTGATCAGCAGAGGCTAATTTTTGCTGGAAAGCAATTGGAA 77212120 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT- 22045 ||| || || |||| |||||||| || ||||| || || ||||||||| | || || Sbjct 77212121 GATGGAAGGACCCTGGCTGATTACAACATACAGAAAGAGTCAACTCTTCATCTAGTTTTG 77212180 Query 22046 ACGTTTACGAGGAGGA 22061 | | ||| |||||||| Sbjct 77212181 AGGCTTA-GAGGAGGA 77212195 >seq3 Length=113259003 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || |||| ||||| ||||| || ||||| ||| | | Sbjct 21885488 ATGCAGATTTTTGTTAAGACCCTAACCGGCAAGACCATCACTTTGGAAGTGGAGAGCTCC 21885429 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || ||| || || || ||||| | || | |||| Sbjct 21885428 GACACCATCGACAATGTGAAAGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 21885369 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||||||||| || || || ||| ||| |||| ||||| || Sbjct 21885368 CAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGGCGAACGTTGGCGGATTATAAC 21885309 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 ||||||||||| || || || || Sbjct 21885308 ATTCAGAAGGAGTCCACCCTCCA 21885286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358073332094368