Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq6 125 6e-24
seq3 93.3 4e-14
seq8 86.0 5e-12
>seq6
Length=78779235
Score = 125 bits (138), Expect = 6e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
||||| || ||||| ||||||||||| | || || ||| ||||| ||||| |||
Sbjct 3703050 GTAGACTCCTTTTGGATGTTGTAATCCGCAAGGGTCCGGCCATCCTCAAGCTGTTTGCCA 3702991
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| |||||||||| || ||||| ||||| || ||||| ||||| |||||| |||
Sbjct 3702990 GCGAAGATGAGACGTTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTTTGCTTTA 3702931
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| | |||||| || || | || | || |||||||| || |||
Sbjct 3702930 ACATTGTCGATGGTGTCAGAGGATTCAACCTCGAGTGTGATTGTCTTGCCGGTTAGTGTT 3702871
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 3702870 TTCACAAAGATCTGCAT 3702854
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || |||||||| | ||| | || || || || |||||||| || |||
Sbjct 3703311 ATGCCTCCACGCAGCCTCAAAACAAGATGCAGGGTTGACTCCTTCTGAATGTTATAGTCG 3703252
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| |||||| ||| ||||| || || ||||| |||| | | || |||||||||
Sbjct 3703251 GCCAAAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCCGGA 3703192
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | |||| || |||| | |||
Sbjct 3703191 GGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCG 3703132
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| || | ||||| || ||||| || || ||||| |||||||||
Sbjct 3703131 ACCTCCAACGTTATGGTTTTCCCAGTCAGGGTCTTGACAAAGATCTGCATG 3703081
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || |||| || || || | || || || || ||||||||||||||
Sbjct 3703767 ATCCCTCCACGAAGCCTCAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCA 3703708
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| || ||| || ||||||||||| || ||||||| | ||| ||||| ||
Sbjct 3703707 GCGAGAGTCCGGCCATCCTCGAGTTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCAGGG 3703648
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| ||||| || ||||| ||||| || | | || | |||||| | | |||
Sbjct 3703647 GGGATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCG 3703588
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || ||||||||||| ||||| || |||||||||||
Sbjct 3703587 ACCTCCAACGTGATGGTCTTGCCGGTCAGGGTTTTGACGAAAATCTGCAT 3703538
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || || | || | ||| | || ||||| || || || ||||||||
Sbjct 3703539 ATTCCTCCACGCAGCCTGAGGACAAGATGAAGAGTGGATTCCTTCTGGATATTGTAATCA 3703480
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| || || || |||||||| |||||| |||| || | || |||||||||
Sbjct 3703479 GCCAGAGTCCGGCCGTCCTCGAGTTGTTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGA 3703420
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | |||| || |||| | |||
Sbjct 3703419 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATAGTATCGGAGCTCTCG 3703360
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386
|| |||| || | ||||| ||||| || || || |||||||| |||||| ||
Sbjct 3703359 ACCTCCAGAGTGATGGTTTTTCCGGTTAGGGTCTTGACAAAAATTTGCATGCCT 3703306
>seq3
Length=113259003
Score = 93.3 bits (102), Expect = 4e-14
Identities = 161/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || | || | || || || || |||||||| |||||
Sbjct 21885259 ATACCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTATAATCC 21885318
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || ||| ||||| || || ||||| |||| || | ||| ||||| ||
Sbjct 21885319 GCCAACGTTCGCCCATCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGG 21885378
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| |||||| ||| | | || | |||||||| | ||
Sbjct 21885379 GGGATTCCCTCCTTGTCCTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGCTCTCC 21885438
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386
|| |||| || | || |||||||| || || || ||||||||||||||| ||
Sbjct 21885439 ACTTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTAACAAAAATCTGCATGCCT 21885492
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| || | ||||| ||| || || || || ||
Sbjct 21885064 GTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTACGTCCATCCTCCAGCTGCTTGCCT 21885123
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | ||||||||||||||| || || || ||||| ||||| ||
Sbjct 21885124 GCAAAGATCAGCCTCTGTTGGTCCGGAGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTC 21885183
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| ||||||| | || || |||| ||| | || |||||||| || ||
Sbjct 21885184 ACATTGTCAATCGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 21885243
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||||||||||||
Sbjct 21885244 TTCACAAAAATCTGCAT 21885260
>seq8
Length=131339754
Score = 86.0 bits (94), Expect = 5e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211
||||| ||||| || || | || | ||| | || || || ||||| |||||||| ||
Sbjct 3135536 ATACCACCACGAAGCCTGAGCACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCT 3135595
Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271
||| | ||| || ||| || || || || || ||| ||||||| | ||| ||||||||
Sbjct 3135596 GCT-AGAGTGCGGCCATCCTCGAGCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCCGG 3135654
Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331
|| || ||||| ||||| ||||| || | | |||| ||| || | | ||
Sbjct 3135655 GGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTGTCAATGGTATCCGAGCTCTC 3135714
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || || || ||||| || || |||||||||||
Sbjct 3135715 CACCTCAAGAGTGATGGTCTTCCCCGTAAGAGTCTTCACGAAAATCTGCAT 3135765
Score = 84.2 bits (92), Expect = 2e-11
Identities = 161/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211
||||| ||||| || | | ||| | || | || || || ||||| |||||||||||
Sbjct 3135992 ATACCTCCACGAAGCCGAAGAACGAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCT 3136051
Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271
||| | || || || ||||| || || || || | ||||| | ||| ||||| ||
Sbjct 3136052 GCT-AGGGTGCGGCCGTCCTCAAGCTGCTTCCCCGCAAAAATGAGCCTCTGCTGGTCTGG 3136110
Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331
|| || || |||||||| ||| || ||| | | || | ||||| | | ||
Sbjct 3136111 GGGGATACCCTCTTTGTCCTGAATTTTGGCTTTGACATTGTCGATTGTGTCAGAGCTCTC 3136170
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386
||| || | ||| | |||||||| ||||| || || || || ||||||||| ||
Sbjct 3136171 GACCTCAAGGGTGATGGTTTTGCCAGTCAGTGTCTTAACGAAGATCTGCATGCCT 3136225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420074020384704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |