Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq3 93.3 4e-14 seq8 86.0 5e-12 >seq6 Length=78779235 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || ||||| ||||||||||| | || || ||| ||||| ||||| ||| Sbjct 3703050 GTAGACTCCTTTTGGATGTTGTAATCCGCAAGGGTCCGGCCATCCTCAAGCTGTTTGCCA 3702991 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||||||||| || ||||| ||||| || ||||| ||||| |||||| ||| Sbjct 3702990 GCGAAGATGAGACGTTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTTTGCTTTA 3702931 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | |||||| || || | || | || |||||||| || ||| Sbjct 3702930 ACATTGTCGATGGTGTCAGAGGATTCAACCTCGAGTGTGATTGTCTTGCCGGTTAGTGTT 3702871 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 3702870 TTCACAAAGATCTGCAT 3702854 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || |||||||| | ||| | || || || || |||||||| || ||| Sbjct 3703311 ATGCCTCCACGCAGCCTCAAAACAAGATGCAGGGTTGACTCCTTCTGAATGTTATAGTCG 3703252 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||| ||||| || || ||||| |||| | | || ||||||||| Sbjct 3703251 GCCAAAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCCGGA 3703192 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | |||| || |||| | ||| Sbjct 3703191 GGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCG 3703132 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||||| || ||||| || || ||||| ||||||||| Sbjct 3703131 ACCTCCAACGTTATGGTTTTCCCAGTCAGGGTCTTGACAAAGATCTGCATG 3703081 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || |||| || || || | || || || || |||||||||||||| Sbjct 3703767 ATCCCTCCACGAAGCCTCAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAATCA 3703708 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || ||||||||||| || ||||||| | ||| ||||| || Sbjct 3703707 GCGAGAGTCCGGCCATCCTCGAGTTGTTTACCGGCAAAGATGAGCCTCTGCTGGTCAGGG 3703648 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | || | |||||| | | ||| Sbjct 3703647 GGGATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCG 3703588 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||||||||| ||||| || ||||||||||| Sbjct 3703587 ACCTCCAACGTGATGGTCTTGCCGGTCAGGGTTTTGACGAAAATCTGCAT 3703538 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || | || | ||| | || ||||| || || || |||||||| Sbjct 3703539 ATTCCTCCACGCAGCCTGAGGACAAGATGAAGAGTGGATTCCTTCTGGATATTGTAATCA 3703480 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || || || |||||||| |||||| |||| || | || ||||||||| Sbjct 3703479 GCCAGAGTCCGGCCGTCCTCGAGTTGTTTTCCAGCGAAGATAAGCCTTTGCTGGTCCGGA 3703420 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || | | |||| || |||| | ||| Sbjct 3703419 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATAGTATCGGAGCTCTCG 3703360 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| || | ||||| ||||| || || || |||||||| |||||| || Sbjct 3703359 ACCTCCAGAGTGATGGTTTTTCCGGTTAGGGTCTTGACAAAAATTTGCATGCCT 3703306 >seq3 Length=113259003 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || |||||||| ||||| Sbjct 21885259 ATACCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTATAATCC 21885318 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||| || || ||||| |||| || | ||| ||||| || Sbjct 21885319 GCCAACGTTCGCCCATCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGG 21885378 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| ||| | | || | |||||||| | || Sbjct 21885379 GGGATTCCCTCCTTGTCCTGGATCTTTGCTTTCACATTGTCGATGGTGTCGGAGCTCTCC 21885438 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| || | || |||||||| || || || ||||||||||||||| || Sbjct 21885439 ACTTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTAACAAAAATCTGCATGCCT 21885492 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||||| ||| || || || || || Sbjct 21885064 GTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTACGTCCATCCTCCAGCTGCTTGCCT 21885123 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||||||||||||||| || || || ||||| ||||| || Sbjct 21885124 GCAAAGATCAGCCTCTGTTGGTCCGGAGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTC 21885183 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | || || |||| ||| | || |||||||| || || Sbjct 21885184 ACATTGTCAATCGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 21885243 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 21885244 TTCACAAAAATCTGCAT 21885260 >seq8 Length=131339754 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| ||||| || || | || | ||| | || || || ||||| |||||||| || Sbjct 3135536 ATACCACCACGAAGCCTGAGCACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCT 3135595 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | ||| || ||| || || || || || ||| ||||||| | ||| |||||||| Sbjct 3135596 GCT-AGAGTGCGGCCATCCTCGAGCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCCGG 3135654 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || ||||| ||||| ||||| || | | |||| ||| || | | || Sbjct 3135655 GGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTGTCAATGGTATCCGAGCTCTC 3135714 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || ||||| || || ||||||||||| Sbjct 3135715 CACCTCAAGAGTGATGGTCTTCCCCGTAAGAGTCTTCACGAAAATCTGCAT 3135765 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| ||||| || | | ||| | || | || || || ||||| ||||||||||| Sbjct 3135992 ATACCTCCACGAAGCCGAAGAACGAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCT 3136051 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | || || || ||||| || || || || | ||||| | ||| ||||| || Sbjct 3136052 GCT-AGGGTGCGGCCGTCCTCAAGCTGCTTCCCCGCAAAAATGAGCCTCTGCTGGTCTGG 3136110 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || || |||||||| ||| || ||| | | || | ||||| | | || Sbjct 3136111 GGGGATACCCTCTTTGTCCTGAATTTTGGCTTTGACATTGTCGATTGTGTCAGAGCTCTC 3136170 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 ||| || | ||| | |||||||| ||||| || || || || ||||||||| || Sbjct 3136171 GACCTCAAGGGTGATGGTTTTGCCAGTCAGTGTCTTAACGAAGATCTGCATGCCT 3136225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420074020384704