Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06]
11,792 sequences; 1,187,538,024 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2 194 3e-44
>seq2
Length=84732013
Score = 194 bits (214), Expect = 3e-44
Identities = 383/560 (68%), Gaps = 10/560 (2%)
Strand=Plus/Plus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||||||||| || ||| |||||||||||||||| | || ||
Sbjct 24868121 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGGTCGATCTC 24868180
Query 42360 -GCCAAGGACACGGCCGGCTGGGAGTCA---CTGTCTGAGAACGAAAAGTTTTTCCTCAA 42415
|||||| | ||| |||||| | || | | |||| ||| |||
Sbjct 24868181 AGCCAAGATATCCGCCA-CTGGGACCAAACCCTAACCGCCGACGAGCGCCACTTCGTCAC 24868239
Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475
|| | || ||||||||||||||||| |||||||| ||| |||||||| ||| | |
Sbjct 24868240 CCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTGGAGAACCTCGCCGGCCG 24868299
Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535
|||||||| ||||| ||| | ||||| | |||||||||||||||||| |||||
Sbjct 24868300 TTTCATGAAGGAGGTCCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCAT 24868359
Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595
|||||| | ||||| ||| ||||| | || ||| | | |||||| ||| |||
Sbjct 24868360 CGAGAACATCCACTCCGAGATGTACTCGCTTCTCCTCGAATCCTACATCAAGGACTCCGA 24868419
Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655
|| | | | || || | ||||| ||||| || || ||| || |||||||| ||
Sbjct 24868420 TGAAAAGAGCCGCCTTTTTCACGCCATCGAGACCATCCCTTGCGTCGCCAAGAAGGCCGA 24868479
Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715
|||||||| || |||||||| | | || | |||| |||||| || | || ||
Sbjct 24868480 GTGGGCGCTGAAGTGGATCGATGGCTCAGA---GTCTTTCGCCGAGAGATTGATCGCTTT 24868536
Query 42716 TACCGCCGTCGAGGGCATCTTCTTCT-CGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774
| | |||||| || || ||||||| |||| || || | |||| |||||||| ||
Sbjct 24868537 TGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTTTG-TGCCATTTTCTGGCTTAAAA 24868595
Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834
|| | | |||||| || | ||||| || ||||| ||||| | ||||| || |
Sbjct 24868596 AGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAGACGAAGGCC 24868655
Query 42835 TGCATAGGGACTTTGCCTGC 42854
| ||| | || || || |||
Sbjct 24868656 TCCATTGCGATTTCGCTTGC 24868675
Score = 194 bits (214), Expect = 3e-44
Identities = 383/560 (68%), Gaps = 10/560 (2%)
Strand=Plus/Minus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||||||||| || ||| |||||||||||||||| | || ||
Sbjct 26603505 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGGTCGATCTC 26603446
Query 42360 -GCCAAGGACACGGCCGGCTGGGAGTCA---CTGTCTGAGAACGAAAAGTTTTTCCTCAA 42415
|||||| | ||| |||||| | || | | |||| ||| |||
Sbjct 26603445 AGCCAAGATATCCGCCA-CTGGGACCAAACCCTAACCGCCGACGAGCGCCACTTCGTCAC 26603387
Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475
|| | || ||||||||||||||||| |||||||| ||| |||||||| ||| | |
Sbjct 26603386 CCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTGGAGAACCTCGCCGGCCG 26603327
Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535
|||||||| ||||| ||| | ||||| | |||||||||||||||||| |||||
Sbjct 26603326 TTTCATGAAGGAGGTCCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCAT 26603267
Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595
|||||| | ||||| ||| ||||| | || ||| | | |||||| ||| |||
Sbjct 26603266 CGAGAACATCCACTCCGAGATGTACTCGCTTCTCCTCGAATCCTACATCAAGGACTCCGA 26603207
Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655
|| | | | || || | ||||| ||||| || || ||| || |||||||| ||
Sbjct 26603206 TGAAAAGAGCCGCCTTTTTCACGCCATCGAGACCATCCCTTGCGTCGCCAAGAAGGCCGA 26603147
Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715
|||||||| || |||||||| | | || | |||| |||||| || | || ||
Sbjct 26603146 GTGGGCGCTGAAGTGGATCGATGGCTCAGA---GTCTTTCGCCGAGAGATTGATCGCTTT 26603090
Query 42716 TACCGCCGTCGAGGGCATCTTCTTCT-CGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774
| | |||||| || || ||||||| |||| || || | |||| |||||||| ||
Sbjct 26603089 TGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCTTTTG-TGCCATTTTCTGGCTTAAAA 26603031
Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834
|| | | |||||| || | ||||| || ||||| ||||| | ||||| || |
Sbjct 26603030 AGCGCGGATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAGACGAAGGCC 26602971
Query 42835 TGCATAGGGACTTTGCCTGC 42854
| ||| | || || || |||
Sbjct 26602970 TCCATTGCGATTTCGCTTGC 26602951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944200004401920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |