Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8 136 9e-27 seq3 123 6e-23 seq6 114 3e-20 seq7 96.9 8e-15 >seq8 Length=131339754 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || ||||||| ||| || |||||||| || ||||| || Sbjct 3135539 CCACCACGAAGCCTGAGCACAAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCT 3135598 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || |||||||||||||| || | ||| || ||| Sbjct 3135599 AGAGTGCGGCCATCCTCGAGCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 3135658 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || |||||||| || || || || || || || | ||| |||| || Sbjct 3135659 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTGTCAATGGTATCCGAGCTC---TCC 3135715 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| || |||||||| ||||| |||||||| Sbjct 3135716 ACCTCAAGAGTGATGGTCTTCCCCGTAAGAGTCTTCACGAAAATCTGCAT 3135765 Score = 107 bits (118), Expect = 5e-18 Identities = 169/238 (71%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| || || || ||||| | ||| || |||||||| || |||| Sbjct 3136219 CATG-CCTCCACGGAGCCTTAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGT 3136277 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||||||| || || || || || | || || || || || || || | ||| || | Sbjct 3136278 CGGCGAGAGTACGACCATCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTG---GT 3136334 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GC 288415 ||||| || || || || ||||||||||| || || || || || || | || || Sbjct 3136335 CTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATTGTGTCAGAGC 3136394 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || |||||||| || || ||||||| |||||||| || |||||||| Sbjct 3136395 TC---TCAACCTCAAGCGTGATGGTTTTGCCGGTCAAGGTCTTGACAAAAATCTGCAT 3136449 Score = 104 bits (114), Expect = 6e-17 Identities = 168/238 (71%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || || || | ||| || || ||||| || |||| Sbjct 3136675 CATG-CCACCCCTGAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 3136733 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | ||||| || || || || || | ||| ||||||||||| || || | ||| || | Sbjct 3136734 CAGCGAGAGTACGGCCATCCTCGAGTTGCTTTCCTGCGAAAATGAGCCTCTGCTG---GT 3136790 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GC 288415 || ||||| || || || |||||||| || ||||| || || || |||| || || Sbjct 3136791 CTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATAGTGTCTGAGC 3136850 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| ||||| || || || ||||| || || |||||||| Sbjct 3136851 TC---TCCACCTCAAGGGTGATAGTCTTTCCTGTAAGTGTCTTCACAAAGATCTGCAT 3136905 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| ||| || || ||||| || || || || Sbjct 3135311 CCACCACGGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCTGCA 3135370 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || | || || ||||| ||||| || | ||| || ||| Sbjct 3135371 AGAGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 3135430 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| ||||||||||| || || ||||| || || || | ||| |||| || Sbjct 3135431 ATCCCTTCCTTATCCTGGATCTTGGCCTTCACATTGTCGATGGTATCCGAGCTC---TCC 3135487 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | |||||||||||||| || || ||||| || || |||||||| Sbjct 3135488 ACCTCCAAAGTGATCGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 3135537 Score = 84.2 bits (92), Expect = 5e-11 Identities = 161/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | ||| || ||||| | || || |||||||| ||||||| Sbjct 3136447 CATG-CCACCTCTTAGACGAAGGACAAGATGGAGGGTCGACTCCTTTTGGATGTTATAGT 3136505 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || || || || || | || || || || || || || | ||| || Sbjct 3136506 CAGCAAGGGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGGTCCG 3136565 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCG 288418 ||||| || || || ||||||||||| || || || || || || | || |||| Sbjct 3136566 GGGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATTGTGTCGGAGCTC- 3136624 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || || |||| |||||||| || |||||||| Sbjct 3136625 --TCGACCTCAAGGGTGATGGTTTTTCCTGTCAAGGTCTTGACAAAAATCTGCAT 3136677 >seq3 Length=113259003 Score = 123 bits (136), Expect = 6e-23 Identities = 147/197 (75%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| ||||| || || || || || | || ||||| || ||| Sbjct 21885982 TCCTTCTGGATGTTATAGTCAGCGAGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCAAAG 21886041 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || |||||| ||||| || || |||||||| || ||||| || Sbjct 21886042 ATCAGCCTCTGCTGG---TCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCTTTTACA 21886098 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | |||| ||| || || ||||| || ||||||||||| || || ||| Sbjct 21886099 TTGTCAATGGTATCGGAGCTC---TCAACCTCGAGAGTAATCGTCTTCCCAGTGAGGGTC 21886155 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| |||||||| Sbjct 21886156 TTGACGAAAATCTGCAT 21886172 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | ||| || ||||||||||| || || ||| Sbjct 21886174 CCACCACGAAGACGGAGGACGAGGTGGAGTGTGGACTCCTTTTGGATATTGTAATCAGCG 21886233 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | ||||| || || |||||||| | || || | ||| Sbjct 21886234 AGGGTACGGCCGTCCTCAAGCTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCAGGGGGG 21886293 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || ||||||||||| ||||| || || || || | || ||| || Sbjct 21886294 ATCCCCTCCTTGTCCTGGATTTTGGCTTTGACATTATCAATGGTGTCAGAACTC---TCG 21886350 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || || || || || || || |||||||| Sbjct 21886351 ACCTCGAGAGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 21886400 >seq6 Length=78779235 Score = 114 bits (126), Expect = 3e-20 Identities = 173/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 288232 ATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGG 288291 || ||||| | || ||||||||||| | ||| || || || | || || || || Sbjct 3704007 ATCATTCACATATCACCACCGCGGAGACGAAGCACAAGGTGGAGAGTAGACTCCTTCTGA 3703948 Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 ||||| || || || || || | || ||||| | || || ||||||||||||| | | Sbjct 3703947 ATATTGTAATCAGCAAGAGTCCTCCCATCTTCAAGCTGCTTCCCTGCGAAGATCAACCTC 3703888 Query 288352 TGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 || ||| || || || || |||||||| || ||||| || ||||| || || | Sbjct 3703887 TGCTGATCCGGCGGAATCCCCTCCTTATCCTGTATCTTCGCCTTGACGTTGTCGATCGTG 3703828 Query 288412 TC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 || |||| || || || | |||||||||||||| |||| |||||||| |||||| Sbjct 3703827 TCAGAGCTC---TCCACCTCCAAGGTGATCGTCTTCCCCGTCAAGGTCTTGACAAATATC 3703771 Query 288469 TGCAT 288473 ||||| Sbjct 3703770 TGCAT 3703766 >seq7 Length=151357931 Score = 96.9 bits (106), Expect = 8e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| | ||||| ||||| | ||| ||||| || | || || || || || Sbjct 149813379 TTCGTTCTGGATGCTGTAGTCTGCGAGGGAGCGGCCGTCCTCCAGCTGCTTCCCAGCAAA 149813438 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||||| | ||||| || || || |||||||| || || |||||||| Sbjct 149813439 GATCAGCCTCTGTTTGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 149813498 Query 288402 TTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || | | || |||| || | || || ||||| ||||| | ||| || ||||| Sbjct 149813499 GTCAGTGGTGTCCGAGCTC---TCGGCCTCCAGAGTGATGGTCTTTCTGGTGAGGGTCTT 149813555 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 149813556 GACGAAAATCTGCAT 149813570 Score = 96.9 bits (106), Expect = 8e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| | ||||| ||||| | ||| ||||| || | || || || || || Sbjct 149813661 TTCGTTCTGGATGCTGTAGTCTGCGAGGGAGCGGCCGTCCTCCAGCTGCTTCCCAGCAAA 149813720 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||||| | ||||| || || || |||||||| || || |||||||| Sbjct 149813721 GATCAGCCTCTGTTTGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 149813780 Query 288402 TTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || | | || |||| || | || || ||||| ||||| | ||| || ||||| Sbjct 149813781 GTCAGTGGTGTCCGAGCTC---TCGGCCTCCAGAGTGATGGTCTTTCTGGTGAGGGTCTT 149813837 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 149813838 GACGAAAATCTGCAT 149813852 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || |||| | ||||| ||||| ||||| ||||| || | || || || || || Sbjct 149802547 TTCGTTCCGGATGCTGTAGTCTGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAA 149802606 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||||| | ||||| || || || |||||||| || || |||||||| Sbjct 149802607 GATCAGCCTCTGTTTGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 149802666 Query 288402 TTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || | || |||| || | || || ||||| ||||| || || || ||||| Sbjct 149802667 GTCAGCGGTGTCCGAGCTC---TCGGCCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTT 149802723 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 149802724 GACGAAAATCTGCAT 149802738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179476171914976